Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D11_e660_07.seq
         (1557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ...    29   6.3  

>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
           V-ATPase C subunit / vacuolar proton pump C subunit
           (DET3) identical to vacuolar ATP synthase subunit C
           SP:Q9SDS7 from [Arabidopsis thaliana]
          Length = 375

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -3

Query: 565 ATYTCLIFSYLSNNQEYKSRISYKSIIRVSL-VDARCTRQVRLARFCEVSQREMTASTAR 389
           A YT  +F+ +++N    +R     +      V+A+ TR+  LA+   V  +E   S+  
Sbjct: 222 ALYTVTLFTRVADNFRIAAREKGFQVRDFEQSVEAQETRKQELAKL--VQDQESLRSSLL 279

Query: 388 SGTYQTSAAPITFWNSLCAFSTFA*SLRSSG 296
              Y +     + W   CA  TFA S+   G
Sbjct: 280 QWCYTSYGEVFSSWMHFCAVRTFAESIMRYG 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,436,812
Number of Sequences: 28952
Number of extensions: 394622
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4183148928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)