Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D10_e652_08.seq
         (1561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385     42   0.001
04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875     41   0.002
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    29   7.5  
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801...    29   10.0 

>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
          Length = 493

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +3

Query: 528 FTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNAVEVGPKHDLVKDLV 707
           F     D  QW    + AGA  +VL +KHH+GF L+PS  + + ++V   P      D+V
Sbjct: 80  FRPAALDASQWMDAAAAAGASLVVLVAKHHDGFCLWPS--AHTAHSVRASPWRGGRGDVV 137

Query: 708 R 710
           R
Sbjct: 138 R 138


>04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875
          Length = 517

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 525 MFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPS 641
           +F     D  QWA+  +  G   +VLT+KHH+GF L+PS
Sbjct: 77  VFAPSALDAGQWARAAAAGGFGRVVLTAKHHDGFCLWPS 115


>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = -1

Query: 403 YTPQCKNIPILALSYHSGNFRVSKSFQSGLNFLEFTSSCSDIEFS-RLSKLYFLAFT-KY 230
           +   C NI  L L Y+ GN R+             T    +IE +  L KL   AF  KY
Sbjct: 402 FVEACPNIRELHLGYYDGNVRIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAFPGKY 461

Query: 229 TSDNNMNIL-MIFKNLITINKNN 164
           +S  ++ ++  ++   IT N +N
Sbjct: 462 SSSLSVRVINSLYLEHITCNISN 484


>03_02_0387 -
           8016399-8016575,8016661-8016788,8017073-8017214,
           8017301-8017396,8017572-8017712,8017857-8018031,
           8018443-8018575,8018661-8018733,8018807-8018900,
           8019890-8019981,8020091-8020185,8020267-8020378
          Length = 485

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -1

Query: 397 PQCKNIPILALSYHSGNFRVSKSFQSGLNFL-EFTSSCSDIEFSR--LSKLYFLAFTKYT 227
           P   +  + A+SY  GN  V    +S ++FL +  S    +E S   LS + FL   K T
Sbjct: 352 PYLASAAVSAVSYLEGNPSVLADLRSNISFLHKELSGTPGLEISSHVLSPIVFLKLKKST 411

Query: 226 SDNNMNI 206
             +N +I
Sbjct: 412 GSSNTDI 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,659,786
Number of Sequences: 37544
Number of extensions: 678023
Number of successful extensions: 1568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5035314872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)