Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_D10_e652_08.seq
(1561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 203 3e-52
SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.) 202 5e-52
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 9e-49
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18) 188 1e-47
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 185 7e-47
SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11) 185 1e-46
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16) 164 2e-40
SB_33577| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.043) 40 0.007
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 31 2.5
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 29 7.6
>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 413
Score = 203 bits (496), Expect = 3e-52
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 2/137 (1%)
Frame = +3
Query: 309 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG--SEWFWSNWKGGSLKYTLFMD 482
K+ P+W LDTR LP+WYDRAK GI +HWGVYSVPS+G +EWFW+ WK GS +Y FM
Sbjct: 24 KYQPNWDSLDTRPLPDWYDRAKFGIIMHWGVYSVPSFGVAAEWFWNYWKSGSPQYVDFMK 83
Query: 483 KNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWN 662
+NYPPGFSY +FAPMF AEFFDP WA L S +GAKY V+TSKHHEG+T + S S++WN
Sbjct: 84 QNYPPGFSYADFAPMFKAEFFDPDIWASLISMSGAKYFVITSKHHEGWTNWRSNVSWNWN 143
Query: 663 AVEVGPKHDLVKDLVRS 713
+V+ GP DL+ DL S
Sbjct: 144 SVDNGPHRDLIGDLADS 160
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +1
Query: 706 SEAVRAEG-MKFGVYHSLYEWFN 771
++++RA G +KFG+Y S +EWFN
Sbjct: 158 ADSIRASGDVKFGLYFSHFEWFN 180
>SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 202 bits (494), Expect = 5e-52
Identities = 84/136 (61%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Frame = +3
Query: 309 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKG-GSLKYTLFMDK 485
++N WK LD R LP WYD+AK GIF+HWGV+SVP +GSEWFW WKG +Y FM K
Sbjct: 10 EYNATWKSLDARPLPAWYDQAKFGIFVHWGVFSVPGFGSEWFWYFWKGLHRPEYVEFMKK 69
Query: 486 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNA 665
NY PGFSY +F PMF AEF+DP+QWA LF+K+GA+Y+VLTSKHHEG+T++ S S++WNA
Sbjct: 70 NYRPGFSYPDFGPMFKAEFYDPEQWADLFAKSGARYVVLTSKHHEGWTMWKSNVSWNWNA 129
Query: 666 VEVGPKHDLVKDLVRS 713
V+ GP DLV DL ++
Sbjct: 130 VDNGPHRDLVGDLAKA 145
Score = 38.3 bits (85), Expect = 0.016
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 706 SEAVRAEGMKFGVYHSLYEWFN 771
++AVR ++FG+YHSLYEWFN
Sbjct: 143 AKAVRKTEVRFGLYHSLYEWFN 164
>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 192 bits (467), Expect = 9e-49
Identities = 77/131 (58%), Positives = 97/131 (74%)
Frame = +3
Query: 303 SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTLFMD 482
S +NP W LD R +P WYD+AK GIF+HWGV+SVPS+GSEWFW W Y F++
Sbjct: 35 STHYNPTWNSLDKRPIPAWYDKAKFGIFMHWGVFSVPSFGSEWFWKFWHDKDKPYVDFVN 94
Query: 483 KNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWN 662
NYPP +SY +FAP TAEFFD +WA L SK+GAKY V TSKHHEG+T +PSK++++WN
Sbjct: 95 NNYPPRWSYADFAPQLTAEFFDANEWADLLSKSGAKYFVFTSKHHEGWTNWPSKQAWNWN 154
Query: 663 AVEVGPKHDLV 695
+VE GP D+V
Sbjct: 155 SVENGPHRDIV 165
>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
Length = 203
Score = 188 bits (457), Expect = 1e-47
Identities = 82/144 (56%), Positives = 103/144 (71%), Gaps = 7/144 (4%)
Frame = +3
Query: 303 SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSE-------WFWSNWKGGSL 461
+ K+ P W LD+R P WYD+AK GIF+HWGVYSVPS+G+E WFW W G+
Sbjct: 22 TSKYLPTWDSLDSRPNPPWYDKAKFGIFMHWGVYSVPSFGAESGGTAGEWFWRYWHDGNP 81
Query: 462 KYTLFMDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPS 641
+ FM KNYPPGFSY +FAPMF AEFFDP ++A L +K+GAKY VLTSKHHEG+T + S
Sbjct: 82 AFVNFMKKNYPPGFSYADFAPMFKAEFFDPDEFADLVAKSGAKYFVLTSKHHEGWTNWRS 141
Query: 642 KRSFSWNAVEVGPKHDLVKDLVRS 713
S++WN+V+ GP DL+ DL S
Sbjct: 142 NVSWNWNSVDNGPHRDLIGDLADS 165
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +1
Query: 706 SEAVRAEG-MKFGVYHSLYEWFN 771
++++RA G +KFG+Y S +EWFN
Sbjct: 163 ADSIRASGDVKFGLYFSHFEWFN 185
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 185 bits (451), Expect = 7e-47
Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 1/133 (0%)
Frame = +3
Query: 309 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTL-FMDK 485
K+ P W LD+R P WYD+AK G+F+HWGVYSVPS+GSEWFW++WK + FM K
Sbjct: 22 KYLPSWDSLDSRPDPPWYDKAKFGVFMHWGVYSVPSFGSEWFWNHWKQQHYPSCIEFMKK 81
Query: 486 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNA 665
NYP GFSY +F PMF AEFFDP +A+L +K+GA+Y VLTSKHHEG+T + S S++WN+
Sbjct: 82 NYPSGFSYADFGPMFKAEFFDPNYFAKLVAKSGARYFVLTSKHHEGWTNWKSNTSWNWNS 141
Query: 666 VEVGPKHDLVKDL 704
V+ GP DL D+
Sbjct: 142 VDNGPHRDLTDDM 154
>SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)
Length = 155
Score = 185 bits (450), Expect = 1e-46
Identities = 79/133 (59%), Positives = 98/133 (73%), Gaps = 4/133 (3%)
Frame = +3
Query: 309 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG----SEWFWSNWKGGSLKYTLF 476
K+ P W+ LD+R P WYD+AK GIF+HWG+YSVPSYG SEWFW W GS F
Sbjct: 22 KYLPTWESLDSRPNPGWYDKAKFGIFMHWGLYSVPSYGDGEASEWFWKYWHDGSSANVNF 81
Query: 477 MDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFS 656
M KN+PPGF+Y +F PMF AEFFDP +A L +K+GAKY VLTSKHHEG+T++ S S++
Sbjct: 82 MKKNFPPGFTYADFGPMFKAEFFDPDVFANLIAKSGAKYFVLTSKHHEGWTMWKSNVSWN 141
Query: 657 WNAVEVGPKHDLV 695
WN+V+ GP DLV
Sbjct: 142 WNSVDNGPHRDLV 154
>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
Length = 476
Score = 164 bits (398), Expect = 2e-40
Identities = 72/158 (45%), Positives = 101/158 (63%), Gaps = 5/158 (3%)
Frame = +3
Query: 234 LVNAKKYNFDNLENSISEHD---EVNSKKF--NPDWKDLDTRKLPEWYDRAKIGIFLHWG 398
+VN K F ++ S + D E+N + PDW+ LD R LP WY+ AK GIF+HWG
Sbjct: 98 IVNHPKAMFASVIRSQQKDDSYYELNQIPYYSTPDWESLDARPLPSWYEDAKFGIFVHWG 157
Query: 399 VYSVPSYGSEWFWSNWKGGSLKYTLFMDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSK 578
+YSVP GSEWFW +W+ G + +M +NYPPGFSY +FA AE F+ W +L +K
Sbjct: 158 LYSVPGVGSEWFWYHWRQGYPEIMEYMWRNYPPGFSYADFASKLKAEMFNATAWHELIAK 217
Query: 579 AGAKYIVLTSKHHEGFTLFPSKRSFSWNAVEVGPKHDL 692
+GA+Y V T KHH+GF + + S++WN+V+ GP D+
Sbjct: 218 SGARYFVFTGKHHDGFVNWNTSYSWNWNSVDNGPHRDI 255
>SB_33577| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.043)
Length = 538
Score = 39.5 bits (88), Expect = 0.007
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 474 FMDKNYPPGFSYQEFAP--MFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKR 647
F + + S + AP F QW GAK++ LT H GF L+PS+
Sbjct: 74 FNMQTFNKSMSQGDVAPPDTFNPSELSVDQWVGAAVSFGAKWVTLTLSHFSGFLLWPSE- 132
Query: 648 SFSW---NAVEVGPKHDLVKDLVRSCTR 722
S+ + N G DL DL++SC +
Sbjct: 133 SYKYTVRNTKWRGGNGDLAWDLIQSCKK 160
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 31.1 bits (67), Expect = 2.5
Identities = 34/138 (24%), Positives = 38/138 (27%), Gaps = 1/138 (0%)
Frame = -3
Query: 1442 GGXAXPGGXHXXXRXRGKDXRPKAAPIGPXXXGXXGXRGXXGXXXXXWXXXXXXXXXXVX 1263
GG G R K R P+GP G G G G
Sbjct: 143 GGRGNEGSAGIPGRAGNKGGRGDRGPVGPV--GVIGNPGLMGIQGSEGPYGPQGMTGD-- 198
Query: 1262 PGXGXCXXDPXKXDFGXXXGPFGAXGXXAPPG-GGRLXXNXQXGFXKFRAPXTXXGXGXK 1086
G DP K G G G PPG G+ G R G +
Sbjct: 199 RGKPGLVGDPGKKGMAGRAGAMGMRGLPGPPGRRGKRGDPGSDGIPGERGDRGI--LGVQ 256
Query: 1085 GFPXKXXXPGXXGXXGEK 1032
G P K PG G G +
Sbjct: 257 GEPGKDGSPGLKGTRGTR 274
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 30.3 bits (65), Expect = 4.4
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +2
Query: 1289 PXXPXPXXXPPXXXXXPXXPPXPXLXXPPXXXXLSPGS*XXXGXPXGRXX-PPXRRP 1456
P P P PP P PP P PP +PGS G P G P ++P
Sbjct: 687 PPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGS--PAGSPSGTSAGNPQQQP 741
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 29.5 bits (63), Expect = 7.6
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = +3
Query: 510 QEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNAVEVGPKHD 689
QEF M E + QQW L+SK G + ++ HH + + + +E P +
Sbjct: 198 QEFGGM--EEVTNQQQWRNLYSKMGIAIMPPSASHHIKMAYKKYLQPYEEHQLE-KPNQE 254
Query: 690 LVKDLVRSCTR*RHEIRR 743
+D V S TR R+ R
Sbjct: 255 PDEDNVDSSTRERNTSMR 272
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,402,460
Number of Sequences: 59808
Number of extensions: 708069
Number of successful extensions: 1562
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5094195218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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