Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D10_e652_08.seq
         (1561 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    28   0.64 
AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.    25   7.8  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
            chain precursor protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
 Frame = -3

Query: 1238 DPXKXDFGXXXGPFGAXGXXAPPGGGRLXXN-XQXGFXKFRAPXTXXGX-GXKGFPXKXX 1065
            DP         GP G  G     GG  L     + G      P    G  G +GFP    
Sbjct: 68   DPSYSIMDTASGPQGPPGKNCTSGGCCLPKCFAEKGNRGLPGPMGLKGAKGVRGFPGSEG 127

Query: 1064 XPGXXGXXGE 1035
             PG  G  GE
Sbjct: 128  LPGEKGTKGE 137


>AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = +3

Query: 261 DNLENSISEHDEVNSKKFNPDW--------KDLDTRKLPEWYDRAKI 377
           DN    + ++++V S     DW        KD + +K  +W DRA I
Sbjct: 176 DNTYEVLIDNEKVESGSLEDDWDFLPPKKIKDPEAKKPEDWDDRATI 222


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,539
Number of Sequences: 2352
Number of extensions: 24982
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 183690540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)