Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D10_e652_08.seq
         (1561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...   173   2e-43
Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical pr...    37   0.044
Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical pr...    37   0.044
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    31   2.9  
Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical p...    31   2.9  
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    30   3.9  
AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen prot...    30   3.9  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    30   5.1  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical ...    29   6.7  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    29   8.9  
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    29   8.9  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score =  173 bits (422), Expect = 2e-43
 Identities = 70/133 (52%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
 Frame = +3

Query: 312 FNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTL--FMDK 485
           + PDW+ LD R LP WYD +K GIF HWG+YSVP++ SEW W  WKG      +  F+DK
Sbjct: 18  YTPDWESLDNRPLPSWYDDSKFGIFCHWGLYSVPAFRSEWMWWYWKGTQPDKDVVNFVDK 77

Query: 486 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNA 665
           NY PG +Y +FA  FTAE+F+  Q+A+    +GA+Y V TSKHHEGFT++PS+ S++WN+
Sbjct: 78  NYKPGTTYADFAKDFTAEYFNANQFAETVKTSGARYFVFTSKHHEGFTMWPSRTSWNWNS 137

Query: 666 VEVGPKHDLVKDL 704
           +++GPK D+V +L
Sbjct: 138 MDIGPKRDIVGEL 150


>Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical protein
            F54D1.3 protein.
          Length = 310

 Score = 36.7 bits (81), Expect = 0.044
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = -3

Query: 1205 GPFGAXGXXAPPG-GGRLXXNXQXGFXKFR-APXTXXGXGXKGFPXKXXXPGXXGXXGEK 1032
            GP G+ G   P G  G+     Q G   F  AP      G  GFP +   PG  G  G++
Sbjct: 169  GPAGSSGPAGPAGPSGQPGTPGQRGNDGFPGAPGAPGDNGQPGFPGQDGAPGQPGADGQR 228

Query: 1031 VTXXPXXVDAP 999
                P    AP
Sbjct: 229  GAGTPGAPGAP 239



 Score = 29.1 bits (62), Expect = 8.9
 Identities = 26/103 (25%), Positives = 26/103 (25%)
 Frame = -3

Query: 1475 GPXXXRPGXXPGGXAXPGGXHXXXRXRGKDXRPKAAPIGPXXXGXXGXRGXXGXXXXXWX 1296
            GP        P G A P G       RG D  P  AP  P   G  G  G  G       
Sbjct: 166  GPAGPAGSSGPAGPAGPSGQPGTPGQRGNDGFP-GAPGAPGDNGQPGFPGQDGAPGQPGA 224

Query: 1295 XXXXXXXXXVXPGXGXCXXDPXKXDFGXXXGPFGAXGXXAPPG 1167
                       PG                 G  GA G   P G
Sbjct: 225  DGQRGAGTPGAPGAPGNAGPAGPSGQDGFPGQDGAPGSAGPAG 267


>Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical protein
            F54D1.2 protein.
          Length = 294

 Score = 36.7 bits (81), Expect = 0.044
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = -3

Query: 1205 GPFGAXGXXAPPG-GGRLXXNXQXGFXKFR-APXTXXGXGXKGFPXKXXXPGXXGXXGEK 1032
            GP G+ G   P G  G+     Q G   F  AP      G  GFP +   PG  G  G++
Sbjct: 153  GPAGSSGPAGPAGPSGQPGTPGQRGNDGFPGAPGAPGDNGQPGFPGQDGAPGQPGADGQR 212

Query: 1031 VTXXPXXVDAP 999
                P    AP
Sbjct: 213  GAGTPGAPGAP 223



 Score = 29.1 bits (62), Expect = 8.9
 Identities = 26/103 (25%), Positives = 26/103 (25%)
 Frame = -3

Query: 1475 GPXXXRPGXXPGGXAXPGGXHXXXRXRGKDXRPKAAPIGPXXXGXXGXRGXXGXXXXXWX 1296
            GP        P G A P G       RG D  P  AP  P   G  G  G  G       
Sbjct: 150  GPAGPAGSSGPAGPAGPSGQPGTPGQRGNDGFP-GAPGAPGDNGQPGFPGQDGAPGQPGA 208

Query: 1295 XXXXXXXXXVXPGXGXCXXDPXKXDFGXXXGPFGAXGXXAPPG 1167
                       PG                 G  GA G   P G
Sbjct: 209  DGQRGAGTPGAPGAPGNAGPAGPSGQDGFPGQDGAPGSAGPAG 251


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical protein
            C15A11.6 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 26/105 (24%), Positives = 28/105 (26%)
 Frame = +1

Query: 1162 PPPGGAXXPXAPKGPSXFPKSXXXGSXXXXPXPGXTXXXXXXXXXSQXXXXSPXXPRXPX 1341
            P P GA     PKGP+  P +   G     P P                  SP     P 
Sbjct: 141  PGPAGAPGQPGPKGPNGNPGAPAQGGGQGPPGPPGPA----------GSAGSPGQAGAPG 190

Query: 1342 XPXXSGPXGAAXGRXSFPRXLXXXWXPPGXAXPPGXXPGRXXXGP 1476
             P   G  G        P        PPG    PG        GP
Sbjct: 191  NPGSPGKSGQRGRGLPGPSGAPGSQGPPGAPGQPGSGNAPGPAGP 235


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical protein
            F54B11.2 protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 36/152 (23%), Positives = 37/152 (24%), Gaps = 2/152 (1%)
 Frame = +1

Query: 1027 VTFSPXXPXXPGXXXFXGNPFXPLPSXVXGALNXXXPX*XFXXRRPP-PGGAXXPXAPKG 1203
            V  +P  P  PG     GNP  P             P        PP P G   P  P G
Sbjct: 113  VAGNPGKPGKPGKPGAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDGPAGPAG 172

Query: 1204 PSXFPKSXXXGSXXXXPXP-GXTXXXXXXXXXSQXXXXSPXXPRXPXXPXXSGPXGAAXG 1380
            P     S    S    P P G                  P        P   GP G    
Sbjct: 173  PDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGP 232

Query: 1381 RXSFPRXLXXXWXPPGXAXPPGXXPGRXXXGP 1476
                          PG A PPG        GP
Sbjct: 233  AGPPGPDGASPTAAPGAAGPPGPPGPAGAPGP 264


>Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical
           protein C33A12.14 protein.
          Length = 329

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -1

Query: 301 FTSSCSDIEFSR--LSKLYFLAFTKYTSDNNMNILMIFKNLITINKNNHNH*DRGKILIQ 128
           FTS C+ IE ++  L+  +F ++T YT+      + I + +I  +  NHN  +   + I 
Sbjct: 96  FTSYCASIEPNKWLLTISFFTSYTNYTAMIYPFFMPIVRLIIITHPKNHNKINSIVMRIA 155

Query: 127 VPI 119
           VP+
Sbjct: 156 VPV 158


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical protein
            F02D10.1 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 27/103 (26%), Positives = 28/103 (27%)
 Frame = +1

Query: 1168 PGGAXXPXAPKGPSXFPKSXXXGSXXXXPXPGXTXXXXXXXXXSQXXXXSPXXPRXPXXP 1347
            PG A  P  P GP         G       PG           S      P  P  P  P
Sbjct: 185  PGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGP-GPAGP--P 241

Query: 1348 XXSGPXGAAXGRXSFPRXLXXXWXPPGXAXPPGXXPGRXXXGP 1476
              +GP G      S          PPG A  PG        GP
Sbjct: 242  GPAGPAGPDGQSGSGSAGGPGPKGPPGPAGQPGSDGNPGTAGP 284


>AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen protein
           52 protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +3

Query: 507 YQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHH--EGFTLFPSKRSFSWNAVEVGP 680
           ++ FA  +  + +DP  + Q    A     VL S+HH  +           S N V+V  
Sbjct: 30  FRRFATSYRTQQYDPTLYVQKMVPADTYQSVLASEHHLPDAVAAVDGSSLGSINGVDVRK 89

Query: 681 KHDLVK 698
           K  LVK
Sbjct: 90  KEKLVK 95


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 378 GIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTLFMDKNYPPGFSY 509
           G+F+  G + V +YG E   + W    +   +++D     GFSY
Sbjct: 80  GLFIEMGPFRVRNYGEEVNRNPWTWNRIANIIYLDAPAGVGFSY 123


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical protein
            C44C10.1 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 21/77 (27%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
 Frame = +1

Query: 997  RGASTSXGXXVTFSPXXPXXPGXXXFXGNPFXPLPSXVXGALNXXXPX*XFXXRRPP-PG 1173
            +G     G      P  P   G     G P  P      G      P   F    P  P 
Sbjct: 102  QGGCCGCGVSAAGPPGAPGQDGEDGSDGQPGAPGNDGPDGPAATPAPAHEFCFDCPAGPP 161

Query: 1174 GAXXPXAPKGPSXFPKS 1224
            G   P  PKGP+  P S
Sbjct: 162  GPAGPAGPKGPNGNPGS 178


>AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical
           protein T07A9.10 protein.
          Length = 562

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -1

Query: 400 TPQCKNIPILALSY-HSGNFRVSKSFQSGLNFLEFTSSCSDIEFSRLSKLYFLAFTKYTS 224
           +P  ++I IL   +     F    S++S   F  F   C D  F +LSK   + + K   
Sbjct: 79  SPVAESIDILINDFSRKTKFNPGNSYRSAHIF--FLDPCCDELFEKLSKSPAVKWIKTLK 136

Query: 223 DNNMNILMIFKNLITIN 173
           + N+N+  +   + T+N
Sbjct: 137 ELNLNLKPVESQIFTVN 153


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical protein
            C15A11.5 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 25/105 (23%), Positives = 27/105 (25%)
 Frame = +1

Query: 1162 PPPGGAXXPXAPKGPSXFPKSXXXGSXXXXPXPGXTXXXXXXXXXSQXXXXSPXXPRXPX 1341
            P P G      PKGP+  P +   G     P P                  SP     P 
Sbjct: 141  PGPAGVPGQPGPKGPNGNPGAPAQGGGQGPPGPPGPA----------GSAGSPGQAGAPG 190

Query: 1342 XPXXSGPXGAAXGRXSFPRXLXXXWXPPGXAXPPGXXPGRXXXGP 1476
             P   G  G        P        PPG    PG        GP
Sbjct: 191  NPGSPGKSGQRGRGLPGPSGAPGPQGPPGAPGQPGSGNAPGPAGP 235


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 204 RIFILLSLVYLVNAKKYNF--DNLENSISEHDEVNSKK 311
           R+ +  +LV L+N+K +NF  D +E  ISE  ++ SK+
Sbjct: 82  RVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSKQ 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,760,039
Number of Sequences: 27780
Number of extensions: 595741
Number of successful extensions: 1646
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4504441732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)