Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D10_e652_08.seq
         (1561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28100.1 68415.m03413 glycosyl hydrolase family 29 / alpha-L-...    42   0.001
At5g25470.2 68418.m03029 expressed protein                             30   3.6  
At5g25470.1 68418.m03028 expressed protein                             30   3.6  
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p...    29   8.3  
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    29   8.3  

>At2g28100.1 68415.m03413 glycosyl hydrolase family 29 /
           alpha-L-fucosidase, putative similar to
           alpha-L-fucosidase SP:P10901 from [Dictyostelium
           discoideum]
          Length = 506

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 525 MFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSK 644
           +F     +  QW Q+   +G   ++LT+KHH+GF L+PS+
Sbjct: 75  IFNPTHLNASQWVQIAKDSGFSRVILTAKHHDGFCLWPSE 114


>At5g25470.2 68418.m03029 expressed protein
          Length = 280

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 261 DNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEW 431
           D ++ ++S+     S     +WK    R  PE + ++  G F H  V+SV  +G+ W
Sbjct: 8   DKIQGNVSKPCFWKSLSPGQNWKSKSMRSFPEEFVKSTPGAFEHRVVFSV-RWGNSW 63


>At5g25470.1 68418.m03028 expressed protein
          Length = 280

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 261 DNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEW 431
           D ++ ++S+     S     +WK    R  PE + ++  G F H  V+SV  +G+ W
Sbjct: 8   DKIQGNVSKPCFWKSLSPGQNWKSKSMRSFPEEFVKSTPGAFEHRVVFSV-RWGNSW 63


>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|Q9Y672 Dolichyl pyrophosphate
           Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Homo sapiens}; contains Pfam
           profile PF03155: ALG6, ALG8 glycosyltransferase family
          Length = 533

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 444 WKGGSLKYTLFMDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYI 596
           ++ G+     +   +YPP  +YQ +       FF+P+  A L S+    Y+
Sbjct: 92  YRNGTYNDLTYWGLDYPPLTAYQSYIHGIFLRFFNPESVALLSSRGHESYL 142


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 544 SILSSGLNFSQKQEPNTLFLPASIMKVSHCSHRNAR--SVGTLLKLVPNTIS*KTWSEAV 717
           S LS+  + ++K+ P T F    ++ +S+C    AR  S  +L+ +V N++  K   E V
Sbjct: 445 SFLSAAKSSTEKKNPGTKFQQCPLLNISYCPASEARLLSGKSLVVVVYNSLGWKR-EEVV 503

Query: 718 R 720
           R
Sbjct: 504 R 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,201,393
Number of Sequences: 28952
Number of extensions: 517923
Number of successful extensions: 1265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4192787520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)