Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D09_e644_07.seq
         (1534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   1.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   1.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   2.0  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 68  RHEAENYFWSDSHPEGIGMEPRAIHPGMKFSIT 166
           RH+  +   S +HP    M P  +H GM  S+T
Sbjct: 353 RHQISSMGHSHAHPMHHDMLPETMHMGMGPSLT 385


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 68  RHEAENYFWSDSHPEGIGMEPRAIHPGMKFSIT 166
           RH+  +   S +HP    M P  +H GM  S+T
Sbjct: 353 RHQISSMGHSHAHPMHHDMLPETMHMGMGPSLT 385


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 593 YLARP*AHVICQSIDPSVYNPRVGRYKDGAICIXGC 700
           Y A P A ++C   + ++Y P +GRY    + +  C
Sbjct: 17  YDATP-ARIVCYFSNWAIYRPGIGRYAQEDLPVDLC 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,285
Number of Sequences: 336
Number of extensions: 5169
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46091250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)