Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D09_e644_07.seq
         (1534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.18 
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    28   3.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   3.9  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    27   6.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   9.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -2

Query: 366 TFIRCTSESTDPPPVVANFT*QVTST*IYFSTACPLFPGTSTYSVFSS----TCGRSARN 199
           T   CT++++   P++   T   +S     S++ PL P TST    S+    T G S+ +
Sbjct: 73  TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL-PSTSTSCTTSTSIPPTGGSSSLS 131

Query: 198 TQASPNKPPFPVIENFIP 145
           T  +P  PP       IP
Sbjct: 132 TPITPTVPPTSTSSTSIP 149


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 501 SLKCCT-EP-EWCYNTGDVVLHVSQKYCYAKQFTWRDHRLTSYANRLIQVFTTRESA 665
           S  C T +P +W YN G  ++  +  Y Y  +  WR+ RL    +     F T + A
Sbjct: 230 STNCTTLDPSQWSYNIGIFMVGAAYMYNYTGETVWRE-RLDGLISHATSYFFTDDIA 285


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 SRGHRHGTARYSSRNEILYYRKR 174
           SR HRH T  Y S+ +  Y R+R
Sbjct: 163 SRHHRHSTTNYHSKRDDRYERRR 185


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 525 EWCYNTGDVVLHVSQKYCYAKQFTWRDHRLTSYANRLIQVF 647
           +W YN G  +   +  Y Y     W+  R+  +AN+  + F
Sbjct: 244 QWTYNIGLYMAGAAYMYNYTNSTVWKT-RVEGFANKTAKTF 283


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 384 TRATPDTFIRCTSESTDPPP 325
           T + P TF+R  S STD PP
Sbjct: 405 TPSKPSTFVRPHSSSTDSPP 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,339,853
Number of Sequences: 5004
Number of extensions: 82247
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 860263516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)