Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D09_e644_07.seq
         (1534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0471 - 18121023-18121213,18121954-18122080,18122221-181222...    30   5.6  
10_01_0226 - 2401252-2401277,2403491-2403537,2404381-2405504           29   7.4  
09_03_0066 - 12026714-12027211,12027783-12028103                       29   9.8  
07_01_0774 - 5974026-5974249,5976379-5976448                           29   9.8  

>11_04_0471 -
           18121023-18121213,18121954-18122080,18122221-18122253,
           18122969-18123009,18123415-18123484,18123626-18123744,
           18123876-18123942,18124735-18124809,18125023-18125050,
           18125130-18125179,18125679-18125741,18125829-18125870,
           18126000-18126078,18127233-18127368,18128013-18128517,
           18129238-18129372
          Length = 586

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 2/145 (1%)
 Frame = +2

Query: 107 PEGIGMEPRAIHPGMKFSITGNGGLLGEACVFRADLPQVEEKTEYVDVPGKRGQAVEKYI 286
           P G   E RAI+P   F+ +       ++     +L  +  K E V++  K G A E++ 
Sbjct: 251 PNGTPRERRAIYPDPTFAQSTRSRDSHDSSTITEELEML--KDENVNLLEKLGLAEERFR 308

Query: 287 HVDVTCHV--KLATTGGGSVDSEVHLMKVSGVALVRKEPGQAIAKLIKVFNVGLDSQLNL 460
             +       K     G  +  EV LMK     LVRKE  Q I K + +       ++  
Sbjct: 309 QSEARTRELEKQVANLGDGLSMEVKLMKRREEMLVRKE--QEIRKAL-ISKNDKSEEIAT 365

Query: 461 LFAHSQTELTFHPLP*MLYGTRMVL 535
           L    Q  +   P   M  G  ++L
Sbjct: 366 LQKQLQASILIFPCQNMNTGLHLLL 390


>10_01_0226 - 2401252-2401277,2403491-2403537,2404381-2405504
          Length = 398

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 317 LILHDKLHRREYISLPPAP-FSPARLRIQSSLRLAVDQLEIRKLRP 183
           L+L   L RR+YI  PPAP + PA     + +  A    E+R LRP
Sbjct: 157 LVLEPMLGRRQYIPAPPAPEYRPAYFSNAAVVSAAGGHDELR-LRP 201


>09_03_0066 - 12026714-12027211,12027783-12028103
          Length = 272

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 239 YVDVPGKRGQAVEKYIHVDVTCH-VKLATTGGGSVDSEVHLMKVSGVALVRKE 394
           YV +    GQ++ + +  D   H V     GGG VDS  ++  V G  +  +E
Sbjct: 20  YVTISAVAGQSITEVVVGDEVVHAVTKLVVGGGGVDSARNITDVDGGDICHRE 72


>07_01_0774 - 5974026-5974249,5976379-5976448
          Length = 97

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +2

Query: 140 HPGMKFSITGNGGLLGEACVFRADLPQVEEKTEYVDVPGKRGQAVEKYIH 289
           HP          G + E+ +FR DL + E     +D  GK    V  Y H
Sbjct: 25  HPRKALPQVARKGTILESAIFRVDLAEYELTPSTLDYDGKNFTQVYAYYH 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,719,664
Number of Sequences: 37544
Number of extensions: 595254
Number of successful extensions: 1291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4930895900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)