Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_D09_e644_07.seq
(1534 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43772| Best HMM Match : DUF243 (HMM E-Value=3) 39 0.012
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 33 0.61
SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06) 32 1.4
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_5683| Best HMM Match : SAND (HMM E-Value=0.073) 30 5.7
SB_30042| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.7
SB_8545| Best HMM Match : C2 (HMM E-Value=0.00073) 29 7.5
SB_48182| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 9.9
>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
Length = 472
Score = 38.7 bits (86), Expect = 0.012
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Frame = +2
Query: 80 ENYFWSDSHP-EGIGMEPRAIHPGMKFSITG-NGGLLGEACVFRADLPQVEEKTEYVDVP 253
ENYFWSDS+P EG G K+S+ G LG + + QV +K
Sbjct: 233 ENYFWSDSNPEEGYAFSISLSLGGHKYSVLDRQGKALGNVEILKNGEKQVVKK------- 285
Query: 254 GKRGQAVEKYIHVDVTCHVKLATTGGGSVDSEVHLMKVSGVALVRKEPGQAIAKLIKV 427
KR V + V KL G +V+L+ V+ ++P + +++ V
Sbjct: 286 -KRFNPVSVELETKVNLRTKLWLKDAGKEARDVNLLGVAIATKYARQPCACVERIVDV 342
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 33.1 bits (72), Expect = 0.61
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +2
Query: 80 ENYFWSDSHPE-GIGMEPRAIHPGMKFSI-TGNGGLLGEACVFRADLPQVEEKTEYVDVP 253
+N+FWSDS+P+ G + + G F + G+ +GE A++ + + + +
Sbjct: 40 DNFFWSDSNPDAGFAFSIQIVSQGETFRVFDGSSRYIGE-----AEVTTILDNQQILGSK 94
Query: 254 GKRGQAVEKYIHVDVTCHVKLATTGGGSVDSEVHLMKVSGVALVRKEPGQAIAKLIKVFN 433
+ + K + V+ C +K + + M+VSGVA K A ++++ +
Sbjct: 95 MEE-SGLNKTVTVEFDCKLKYSC----DISLAPKTMRVSGVAEAHKSRDTHRASVVQITD 149
Query: 434 VGL 442
+ L
Sbjct: 150 IEL 152
>SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06)
Length = 183
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/44 (47%), Positives = 21/44 (47%)
Frame = +1
Query: 4 WXXPAVAAALXTSGXPPGCRXSARGRKLFLVRFASRGHRHGTAR 135
W AVAAAL PPGCR S R LV HR GT R
Sbjct: 4 WSSTAVAAALELVD-PPGCRNSIRTVAQLLVEAL---HRRGTRR 43
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 354 CTSESTDPPPVVANFT*QVTST*IYFSTACPLFPGTSTYSVFSSTCGRSARN 199
C +ST P +A ++ T F CP+ ST+S +SS C RS N
Sbjct: 703 CVRKSTSPADYIARCIGELNQTKHCFEGHCPISGEWSTWSEWSS-CSRSCNN 753
>SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)
Length = 311
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 185 GEACVFRADLPQVEEKTEYVDVPGKRGQAVEKYIHV 292
GE + DLP+++EK E + VP K+ Q + IHV
Sbjct: 196 GEFRIMVKDLPKIDEKGEIISVPNKK-QIEKLPIHV 230
>SB_30042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 546 DVVLHVSQKYCYAKQFTWRDHRLTSYANRLIQVFTTRESADIRMVLFVFXV---VGFTST 716
++ ++++K +A Q W+ H + Y N ++ + T ++ + LF V V +T
Sbjct: 169 NIEANITEKLLFAHQTAWQRHLMGRYGNEIMLLDATYKTMRFDLPLFFLVVKTKVNYTVV 228
Query: 717 SSF 725
SF
Sbjct: 229 GSF 231
>SB_8545| Best HMM Match : C2 (HMM E-Value=0.00073)
Length = 106
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 WXXPAVAAALXTSGXPPGCRXSARGRKLFLVRFASRGHRHGTARYS--SRNEI 156
W AVAAAL PPGCR S + R + A+ + H T ++ ++NE+
Sbjct: 4 WSSTAVAAALELVD-PPGCRNSMKQRFKTKAKPATNPNFHETFTFTRITQNEL 55
>SB_48182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 546 DVVLHVSQKYCYAKQFTWRDHRLTSYANRLIQVFTTRESADIRMVLFVFXV---VGFTST 716
++ ++++K +A Q W+ H + Y N ++ + T ++ + LF V V +T
Sbjct: 73 NIEANITEKLLFAYQTAWQRHLMGRYGNEIMLLDATYKTMRFDLPLFFLVVKTKVNYTVV 132
Query: 717 SSF 725
SF
Sbjct: 133 GSF 135
>SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 391 LANESYTRYLHQVHLRVNRPSPGSG*FYMTSYIDVNIFLYRLPPF--PRHVYVFSLL 227
+A SYT +HL ++ P+P + Y +Y ++++L+ P P + Y ++LL
Sbjct: 7 IATPSYTYTYTLLHLYLHPPTPIATPSYTYTYTLLHLYLHPPTPIGTPSYTYTYTLL 63
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 320 WLILHDKLHRREYISLPPAPFSPA 249
WLI H K++ E I PP P +PA
Sbjct: 436 WLIRHQKMYHEEVI--PPTPITPA 457
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,683,127
Number of Sequences: 59808
Number of extensions: 655605
Number of successful extensions: 1471
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4988555225
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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