Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D09_e644_07.seq
         (1534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   4.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   9.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   9.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 911 FIDYSXPHDFRGX*ITKKKP 852
           FI++S P  ++G  I +KKP
Sbjct: 532 FIEFSKPFKYQGITILEKKP 551


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +2

Query: 248 VPGKRGQAVEKYIHVDVTCHVKLATTGGGSVDSEVHLMKVSGVALVRK---EPGQAIAKL 418
           VPG  G    K   V    H   A + GG++++ ++       A   +    PG+ I KL
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIHPGKDINKL 396

Query: 419 IKVFNVGLDSQLNLLF 466
             +    +D    ++F
Sbjct: 397 YGMTPSDIDKYSRIVF 412


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +2

Query: 248 VPGKRGQAVEKYIHVDVTCHVKLATTGGGSVDSEVHLMKVSGVALVRK---EPGQAIAKL 418
           VPG  G    K   V    H   A + GG++++ ++       A   +    PG+ I KL
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIHPGKDINKL 396

Query: 419 IKVFNVGLDSQLNLLF 466
             +    +D    ++F
Sbjct: 397 YGMTPSDIDKYSRIVF 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,008
Number of Sequences: 438
Number of extensions: 6629
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53711625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)