Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D09_e644_07.seq
         (1534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containi...    30   4.7  
At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein ...    30   4.7  
At2g39700.1 68415.m04870 expansin, putative (EXP4) similar to al...    29   6.2  

>At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 646

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 119 GMEPRAIHPGMKFSITGNGGLLGEACVFRADLP 217
           G+EPR  H G    + G  GLL EA  F  ++P
Sbjct: 406 GLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP 438


>At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 476

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 61  RXSARGRKLFLVRFASRGHRHGTARYSSR-NEILYYRKRGF--IGRSLRISS*STASR 225
           R S+RGR +   R +SRG R G+   SSR NE L  R      +G     SS + ASR
Sbjct: 396 RESSRGRGIMHSRESSRGRRGGSWELSSRVNEDLRTRDESVSRVGEDSSESSDNDASR 453


>At2g39700.1 68415.m04870 expansin, putative (EXP4) similar to
           alpha-expansin 6 precursor GI:16923359 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 257

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 LKCCTEPEWCYNTGDVVLHVSQKYC 578
           LKC  +P+WC++    +L  +  +C
Sbjct: 86  LKCANDPQWCHSGSPSILITATNFC 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,405,152
Number of Sequences: 28952
Number of extensions: 449045
Number of successful extensions: 912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4106040192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)