Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_D07_e628_07.seq
(1515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 229 6e-60
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 229 6e-60
SB_56| Best HMM Match : Actin (HMM E-Value=0) 229 6e-60
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 229 6e-60
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 229 6e-60
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 1e-28
SB_54| Best HMM Match : Actin (HMM E-Value=0) 107 3e-23
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 93 5e-19
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 2e-18
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 81 3e-15
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 60 5e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 1e-07
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 41 0.002
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.26
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 33 0.45
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 33 0.79
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 32 1.0
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 30 4.2
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.6
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 229 bits (559), Expect = 6e-60
Identities = 105/108 (97%), Positives = 107/108 (99%)
Frame = +3
Query: 309 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 488
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 48 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
Query: 489 EAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
EAPLNPKANREKMTQIMFETFN+PAMYVA QAVLSLYASGRTTGIV+D
Sbjct: 108 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
Score = 53.6 bits (123), Expect = 4e-07
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
SGDGV+HTVPIYEGY L H+ + M I +RGY F REIV +
Sbjct: 156 SGDGVTHTVPIYEGYALP--HAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 814 KE 819
KE
Sbjct: 214 KE 215
Score = 52.0 bits (119), Expect = 1e-06
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +1
Query: 166 MCDEEVAALVVDNGSGMCKAGFAGDXRSPRRI 261
M D+E+AALVVDNGSGMCKAGFAGD +PR +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDD-APRAV 31
Score = 46.4 bits (105), Expect = 6e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQGVMVLHGSE 319
APRAVFPSIVGRPRHQGVMV G +
Sbjct: 27 APRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 229 bits (559), Expect = 6e-60
Identities = 105/108 (97%), Positives = 107/108 (99%)
Frame = +3
Query: 309 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 488
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 47 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 106
Query: 489 EAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
EAPLNPKANREKMTQIMFETFN+PAMYVA QAVLSLYASGRTTGIV+D
Sbjct: 107 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
Score = 52.8 bits (121), Expect = 7e-07
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
SGDGV+HTVPIYEGY L H+ + M I +RGY F REIV +
Sbjct: 155 SGDGVTHTVPIYEGYALP--HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 212
Query: 814 KE 819
KE
Sbjct: 213 KE 214
Score = 49.2 bits (112), Expect = 9e-06
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +1
Query: 172 DEEVAALVVDNGSGMCKAGFAGDXRSPRRI 261
+++VAALVVDNGSGMCKAGFAGD +PR +
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDD-APRAV 30
Score = 46.4 bits (105), Expect = 6e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQGVMVLHGSE 319
APRAVFPSIVGRPRHQGVMV G +
Sbjct: 26 APRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 229 bits (559), Expect = 6e-60
Identities = 105/108 (97%), Positives = 107/108 (99%)
Frame = +3
Query: 309 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 488
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 47 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 106
Query: 489 EAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
EAPLNPKANREKMTQIMFETFN+PAMYVA QAVLSLYASGRTTGIV+D
Sbjct: 107 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
Score = 52.8 bits (121), Expect = 7e-07
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
SGDGV+HTVPIYEGY L H+ + M I +RGY F REIV +
Sbjct: 155 SGDGVTHTVPIYEGYALP--HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 212
Query: 814 KE 819
KE
Sbjct: 213 KE 214
Score = 50.4 bits (115), Expect = 4e-06
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +1
Query: 172 DEEVAALVVDNGSGMCKAGFAGDXRSPRRI 261
++EVAALVVDNGSGMCKAGFAGD +PR +
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDD-APRAV 30
Score = 46.4 bits (105), Expect = 6e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQGVMVLHGSE 319
APRAVFPSIVGRPRHQGVMV G +
Sbjct: 26 APRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 229 bits (559), Expect = 6e-60
Identities = 105/108 (97%), Positives = 107/108 (99%)
Frame = +3
Query: 309 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 488
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 48 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
Query: 489 EAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
EAPLNPKANREKMTQIMFETFN+PAMYVA QAVLSLYASGRTTGIV+D
Sbjct: 108 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
Score = 56.4 bits (130), Expect = 6e-08
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +1
Query: 166 MCDEEVAALVVDNGSGMCKAGFAGDXRSPRRI 261
MCD++VAALVVDNGSGMCKAGFAGD +PR +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDD-APRAV 31
Score = 52.8 bits (121), Expect = 7e-07
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
SGDGV+HTVPIYEGY L H+ + M I +RGY F REIV +
Sbjct: 156 SGDGVTHTVPIYEGYALP--HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 814 KE 819
KE
Sbjct: 214 KE 215
Score = 46.4 bits (105), Expect = 6e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQGVMVLHGSE 319
APRAVFPSIVGRPRHQGVMV G +
Sbjct: 27 APRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 229 bits (559), Expect = 6e-60
Identities = 105/108 (97%), Positives = 107/108 (99%)
Frame = +3
Query: 309 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 488
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 48 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
Query: 489 EAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
EAPLNPKANREKMTQIMFETFN+PAMYVA QAVLSLYASGRTTGIV+D
Sbjct: 108 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
Score = 52.0 bits (119), Expect = 1e-06
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +1
Query: 166 MCDEEVAALVVDNGSGMCKAGFAGDXRSPRRI 261
M D+++AALV+DNGSGMCKAGFAGD +PR +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDD-APRAV 31
Score = 46.4 bits (105), Expect = 6e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQGVMVLHGSE 319
APRAVFPSIVGRPRHQGVMV G +
Sbjct: 27 APRAVFPSIVGRPRHQGVMVGMGQK 51
Score = 34.3 bits (75), Expect = 0.26
Identities = 16/20 (80%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +1
Query: 634 SGDGVSHTVPIYE--GYXLT 687
SGDGVSHTVPIYE GY T
Sbjct: 156 SGDGVSHTVPIYEERGYSFT 175
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 124 bits (300), Expect = 1e-28
Identities = 61/131 (46%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Frame = +3
Query: 249 PAPYFPRSWGDLVTRASWSC--MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 422
PA FP G + R+S + KD VGDEA R +L + YP+++GIV NWDDM+
Sbjct: 28 PAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKH 87
Query: 423 IWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLY 599
+W +TF +++ + P VLLTE PLNP NREKM ++MFE + +Y+A QAVL+LY
Sbjct: 88 VWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLY 147
Query: 600 ASGRTTGIVLD 632
A G TG+V+D
Sbjct: 148 AQGLLTGVVID 158
Score = 33.1 bits (72), Expect = 0.60
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
SGDGV+H P+YEG+ L H + + RGY F E V
Sbjct: 159 SGDGVTHICPVYEGFALP--HLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMM 216
Query: 814 KE 819
KE
Sbjct: 217 KE 218
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 107 bits (256), Expect = 3e-23
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +3
Query: 420 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLY 599
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 600 ASGRTTGIVLD 632
ASGRTTG V D
Sbjct: 2189 ASGRTTGTVFD 2199
Score = 43.2 bits (97), Expect = 6e-04
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 637 GDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEXK 816
GDGVSHTVP+Y+GY L H+ + +RGY F ++I+ + K
Sbjct: 2201 GDGVSHTVPVYDGYWLP--HATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLK 2258
Query: 817 E 819
E
Sbjct: 2259 E 2259
Score = 32.7 bits (71), Expect = 0.79
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQ 292
+PR VFP+IVGRPRH+
Sbjct: 2115 SPRVVFPAIVGRPRHK 2130
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 190 LVVDNGSGMCKAGFAGDXRSPR 255
+V+DNGSG CKAG + D SPR
Sbjct: 2097 VVIDNGSGFCKAGLSTD-ESPR 2117
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 93.1 bits (221), Expect = 5e-19
Identities = 39/55 (70%), Positives = 49/55 (89%)
Frame = +3
Query: 468 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
+HPVLLTEAPLNP+ NREK ++ FETFN PA++++ QAVLSLYA+GRTTG+VLD
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLD 180
Score = 41.9 bits (94), Expect = 0.001
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
+GDGVSH+VPIYEG+ + HS + T + K G+ F EIV
Sbjct: 181 AGDGVSHSVPIYEGFAMP--HSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTI 238
Query: 814 KE 819
KE
Sbjct: 239 KE 240
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 91.5 bits (217), Expect = 2e-18
Identities = 41/44 (93%), Positives = 41/44 (93%)
Frame = +3
Query: 309 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 440
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 47 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 68.5 bits (160), Expect = 1e-11
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +3
Query: 513 NREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
N + M +IMFETFN+PAMYVA QAVLSLYASGRTTGIV+D
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 117
Score = 53.6 bits (123), Expect = 4e-07
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
SGDGV+HTVPIYEGY L H+ + M I +RGY F REIV +
Sbjct: 118 SGDGVTHTVPIYEGYALP--HAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 175
Query: 814 KE 819
KE
Sbjct: 176 KE 177
Score = 50.4 bits (115), Expect = 4e-06
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +1
Query: 172 DEEVAALVVDNGSGMCKAGFAGDXRSPRRI 261
D++VAALV+DNGSGMCKAGFAGD +PR +
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDD-APRAV 30
Score = 46.4 bits (105), Expect = 6e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQGVMVLHGSE 319
APRAVFPSIVGRPRHQGVMV G +
Sbjct: 26 APRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 80.6 bits (190), Expect = 3e-15
Identities = 32/85 (37%), Positives = 57/85 (67%)
Frame = +3
Query: 378 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 557
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 558 PAMYVAXQAVLSLYASGRTTGIVLD 632
PA ++ +VL+ +A+GR+ G+V+D
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVID 87
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 60.1 bits (139), Expect = 5e-09
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +3
Query: 534 IMFETFNTPAMYVAXQAVLSLYASGRTTGIVLD 632
IMFE FN+PA+YVA QAVLSLYASGRTTG+V D
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFD 33
Score = 51.2 bits (117), Expect = 2e-06
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXLTGRHSXVXTXXGPEPXXLPWMXIXXKRGYXFXXXXXREIVXEX 813
SGDGVSH VPIYEGY L H+ + M + +RGY F REIV +
Sbjct: 34 SGDGVSHNVPIYEGYALP--HAILRLDLAGRDLTDYLMKLMTERGYSFTTTAEREIVRDI 91
Query: 814 KE 819
KE
Sbjct: 92 KE 93
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/55 (45%), Positives = 32/55 (58%)
Frame = +3
Query: 321 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 485
D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 41.1 bits (92), Expect = 0.002
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 423 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAXQAVLSLYA 602
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 603 SGRTTGIV 626
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.26
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 327 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 449
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 33.5 bits (73), Expect = 0.45
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 245 APRAVFPSIVGRPRHQ 292
AP+ VFP IVGRPRHQ
Sbjct: 1377 APKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 32.7 bits (71), Expect = 0.79
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 187 ALVVDNGSGMCKAGFAGDXRSPRRI 261
A+V+DNG G+ K GFAGD R PR I
Sbjct: 702 AIVLDNGCGISKIGFAGD-RVPRII 725
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 32.3 bits (70), Expect = 1.0
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 510 ANREKMTQIMFETFNTPAMYVAXQAVLSLYASGRTTGIV 626
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.9 bits (69), Expect = 1.4
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Frame = +3
Query: 198 RQWVRNVQSRFRGRRALPAPYFPRSWGDLVTRASWSCMGQKDS---YVGDEAQSKRGIL- 365
++W+ VQ + G R P Y G + R G+ DS VG++ S I
Sbjct: 77 QRWI-TVQG-WLGNRQNPKTYVQELSGKIGGRK-----GEPDSGGLAVGNDIGSVEMIRW 129
Query: 366 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 521
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 130 ALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 30.3 bits (65), Expect = 4.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 634 SGDGVSHTVPIYEGYXL 684
SGDGV+H +P+ EGY +
Sbjct: 68 SGDGVTHVIPVAEGYVI 84
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 29.9 bits (64), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 604 DAYSESTAXIATYMAGVLKVSNIICVIFSLLALGLR 497
D SE AT+ AG L + +IC+++ LLA R
Sbjct: 1839 DEESEMFRQAATWSAGALGILTVICLLYELLARSRR 1874
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 29.9 bits (64), Expect = 5.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 264 GNTARGAXVSRETGFAHSGPIVYDQRGNFLV 172
G G+ VS ETG AH+G I+ +Q + +V
Sbjct: 9 GENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,899,705
Number of Sequences: 59808
Number of extensions: 736834
Number of successful extensions: 2618
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2594
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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