Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D06_e620_08.seq
         (1502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    36   0.015
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    28   3.8  
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    27   6.7  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
 Frame = +1

Query: 103 KIQMAVRSRANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDIL 282
           KI+  +R+  N   N+  +  +  ++   E  +L  ++KE    + ST + +++L  DIL
Sbjct: 462 KIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDIL 521

Query: 283 NLSIRIE--PKEITELSXRIXXSVSQXTNIENXITETXPDLERAKSAXGE 426
           N   + E    ++ EL   +   +S   ++ + ++    + E A +   E
Sbjct: 522 NEKKKHEVYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEAAVATNNE 571


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +1

Query: 112 MAVRSRANELFNKAHDFKSSAERIXNESQDLTI----ELKEF-LSNTSSTPADVRTLAND 276
           M+ + RAN+  N A  + SSA  + N  +  +     + + F  S TS  P++    AND
Sbjct: 1   MSYQQRANDSMNSAKQYSSSAGAVHNSDEPFSSSGAPQNRNFDTSYTSEIPSNSSRAAND 60

Query: 277 I 279
           +
Sbjct: 61  M 61


>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 121 RSRANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTP 249
           R      + K H+ K   E++  +  D+T+E  E L   +STP
Sbjct: 33  RKTLKRRYKKVHEAKKQEEKLATKKFDITVE--EALQVVASTP 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,389
Number of Sequences: 5004
Number of extensions: 17359
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 840441776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)