Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D06_e620_08.seq
         (1502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421...    30   4.1  

>01_01_0568 -
           4207812-4209587,4210056-4210291,4210647-4210793,
           4211857-4212145
          Length = 815

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 25/98 (25%), Positives = 44/98 (44%)
 Frame = +1

Query: 121 RSRANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI 300
           ++ A EL  +    +SS  +  ++   L  +LKE L + +     V  L+ +I N  IRI
Sbjct: 290 KTLAEELREEIRRLESSLAQAGDDKDVLEAKLKEKLGDVNILQEKVSLLSQEIDNKGIRI 349

Query: 301 EPKEITELSXRIXXSVSQXTNIENXITETXPDLERAKS 414
                 ELS  +    +   N+ +   +T   LE A++
Sbjct: 350 R-----ELSSLLSSKEADYRNLCSFSDQTKESLELAEA 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,676,952
Number of Sequences: 37544
Number of extensions: 104438
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4814874820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)