Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D06_e620_08.seq
         (1502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 48   2e-05
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.007
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)                  32   1.0  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           30   5.5  
SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 48/97 (49%)
 Frame = +1

Query: 121  RSRANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI 300
            R+ A    +KA D +  A+        L  ++ EFL+         R LAN +LN+++ +
Sbjct: 821  RTAAETAISKAMDAQMRAQNATKRMDQLIKDILEFLAQPFPDIDMSRMLANKVLNMTLSV 880

Query: 301  EPKEITELSXRIXXSVSQXTNIENXITETXPDLERAK 411
             P +IT+L+  I  +    T ++  + +T  +L RA+
Sbjct: 881  SPDQITKLAQDIREAWKSLTGVDEILEKTKQNLTRAE 917


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 39.5 bits (88), Expect = 0.007
 Identities = 28/131 (21%), Positives = 54/131 (41%)
 Frame = +1

Query: 13  RNSXTRRHEASCRIWHXAARGX*INXLKXNKIQMAVRSRANELFNKAHDFKSSAERIXNE 192
           +N  T   E   +  H A        L+  K  M + +R  +L +   D +S   R+   
Sbjct: 398 QNKITELTETIKKAEHKAVESEKQRKLENEKHSMELEAREKDLLS---DKQSELARVSKR 454

Query: 193 SQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRIEPKEITELSXRIXXSVSQXTNIEN 372
            +  T E+K+ +    +  ++  TLAND+      +E + ITE S  +    S+   +  
Sbjct: 455 MESKTNEMKKIVKELRAKLSEKETLANDLEQKLKALEDRSITEKSEAVLLFESKLATLNK 514

Query: 373 XITETXPDLER 405
            I +   ++ +
Sbjct: 515 TIEDLTQEVSQ 525


>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
          Length = 551

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 20/111 (18%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
 Frame = +1

Query: 103 KIQMAVRSRANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDIL 282
           +++  + ++   + N+    + + E + ++   L  ELK      +S    +    N+++
Sbjct: 131 QVKNTLETQVMNIENELQSTRVTLESVTSDKDALETELKSQKEAFASMKGSLEDRINELV 190

Query: 283 NLSI---RIEPKEITELSXRIXXSVSQXTNIENXITETXPDLERAKSAXGE 426
             +    + + KE+ E S ++   ++Q   IEN ++ T  DL + +    E
Sbjct: 191 GQAEADRQQKEKELEEASDKLQLLITQKLAIENQLSSTEKDLNKTREEFEE 241


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +1

Query: 118 VRSRANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPA---DVRTLANDI--L 282
           + ++ N+L  K HDF +    +  +  DL  +L +  +      A   D+ T  ND+   
Sbjct: 328 LNTKVNDLNTKVHDFNTKVHDLNTKVHDLNTKLHDLNTKVHDLNAKVHDLNTKVNDLNTK 387

Query: 283 NLSIRIEPKEITELSXRI 336
           N  +  +  ++ +L+ ++
Sbjct: 388 NTKVNDQNTKVNDLNTKV 405


>SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 151 AHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNL 288
           +HD   + E+  N+S+   + L++ L N  +T       ANDI ++
Sbjct: 190 SHDVYPNLEQFKNQSRTKLLPLQQTLKNLDTTDKQSSATANDIYDI 235


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 154  HDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI--EPKEITELS 327
            +  + S + + NE+  LTIELK            ++ L N +   +IR+  + ++++EL+
Sbjct: 1145 NSLEKSKKDLENETSSLTIELKAISQEKQEGDRKIKMLENQMSEANIRLADDEQKVSELT 1204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,442
Number of Sequences: 59808
Number of extensions: 122098
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4871177455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)