Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D06_e620_08.seq
         (1502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-2|AAP46270.1|  587|Caenorhabditis elegans Hypothetical ...    53   6e-07
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   8.6  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   8.6  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    29   8.6  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   8.6  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   8.6  

>AF039041-2|AAP46270.1|  587|Caenorhabditis elegans Hypothetical
           protein W03F8.10 protein.
          Length = 587

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 25/89 (28%), Positives = 48/89 (53%)
 Frame = +1

Query: 121 RSRANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI 300
           +++A + +  A +    A     E   +  E+ EFL+   S+P  +R LA ++L   I +
Sbjct: 280 KAKAEKAYEVAKNTAQRANSSRAELDKIAEEIGEFLTAQKSSPEQIRNLAEEVLGKEISL 339

Query: 301 EPKEITELSXRIXXSVSQXTNIENXITET 387
            P +IT+L+ +I  S+++  NI+  + ET
Sbjct: 340 TPDQITDLTGKIKESLAKINNIDEILNET 368


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 130  ANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI--E 303
            A++   KA       E I  + Q+ T +L +      +       LA   LN + ++  E
Sbjct: 2293 ADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAEELAA-YLNSAQQLLKE 2351

Query: 304  PKEITELSXRIXXSVSQXTNIENXITETXPDLERAKSAXGE 426
             K   + S  I   + Q T +EN +     DLER ++A GE
Sbjct: 2352 SKSKADKSNNIAKML-QLTKVENLVAAITDDLERVEAAKGE 2391


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 130  ANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI--E 303
            A++   KA       E I  + Q+ T +L +      +       LA   LN + ++  E
Sbjct: 2293 ADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAEELAA-YLNSAQQLLKE 2351

Query: 304  PKEITELSXRIXXSVSQXTNIENXITETXPDLERAKSAXGE 426
             K   + S  I   + Q T +EN +     DLER ++A GE
Sbjct: 2352 SKSKADKSNNIAKML-QLTKVENLVAAITDDLERVEAAKGE 2391


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 130 ANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI--E 303
           A++   KA       E I  + Q+ T +L +      +       LA   LN + ++  E
Sbjct: 107 ADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAEELAA-YLNSAQQLLKE 165

Query: 304 PKEITELSXRIXXSVSQXTNIENXITETXPDLERAKSAXGE 426
            K   + S  I   + Q T +EN +     DLER ++A GE
Sbjct: 166 SKSKADKSNNIAKML-QLTKVENLVAAITDDLERVEAAKGE 205


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 130  ANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI--E 303
            A++   KA       E I  + Q+ T +L +      +       LA   LN + ++  E
Sbjct: 2293 ADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAEELAA-YLNSAQQLLKE 2351

Query: 304  PKEITELSXRIXXSVSQXTNIENXITETXPDLERAKSAXGE 426
             K   + S  I   + Q T +EN +     DLER ++A GE
Sbjct: 2352 SKSKADKSNNIAKML-QLTKVENLVAAITDDLERVEAAKGE 2391


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 130  ANELFNKAHDFKSSAERIXNESQDLTIELKEFLSNTSSTPADVRTLANDILNLSIRI--E 303
            A++   KA       E I  + Q+ T +L +      +       LA   LN + ++  E
Sbjct: 2293 ADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAEELAA-YLNSAQQLLKE 2351

Query: 304  PKEITELSXRIXXSVSQXTNIENXITETXPDLERAKSAXGE 426
             K   + S  I   + Q T +EN +     DLER ++A GE
Sbjct: 2352 SKSKADKSNNIAKML-QLTKVENLVAAITDDLERVEAAKGE 2391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,049,573
Number of Sequences: 27780
Number of extensions: 93988
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4329178048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)