Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D05_e612_07.seq
         (1579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6) i...    29   8.4  
At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6) i...    29   8.4  

>At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 663

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 247 LICGPKFSSSVTKVRVTSLCVIILPVIFKXCLCIILFSFNRXK 119
           L+  P F     K     +  I++PV     +C+ +FSF+  K
Sbjct: 264 LVSTPSFPPGKGKNSTVIIIAIVVPVAISVLICVAVFSFHASK 306


>At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 659

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 247 LICGPKFSSSVTKVRVTSLCVIILPVIFKXCLCIILFSFNRXK 119
           L+  P F     K     +  I++PV     +C+ +FSF+  K
Sbjct: 264 LVSTPSFPPGKGKNSTVIIIAIVVPVAISVLICVAVFSFHASK 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,879
Number of Sequences: 28952
Number of extensions: 305460
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4250619072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)