Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D04_e604_08.seq
         (1529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...   101   2e-22
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    34   0.060
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    31   0.32 
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    28   3.9  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   5.2  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    27   6.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   6.9  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score =  101 bits (243), Expect = 2e-22
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
 Frame = +3

Query: 150 MSWQDYVDKQLMASRCVSKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 326
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 327 GVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGD 506
           G+ +AG +YI +    R I  KL K G+ C+ T+  +++S Y E   P +AA + E L D
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 507 YLITCGY 527
           YL+  GY
Sbjct: 121 YLVGVGY 127


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 33.9 bits (74), Expect = 0.060
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 835  LVEKSKXKFKNTNLNCTIQXQLLRG-SGERTKRVQNPQSNRDYTYVTQ 695
            L+ KSK KF   N + T   Q +RG  G+R K +++ + NR + ++ Q
Sbjct: 1273 LIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELNRKHDHIVQ 1320


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 404 RRALHEDTASRRNFSL*RTHSTPAGRIRSRE 496
           +R+LH+ T S     L RT+S P   +RSRE
Sbjct: 426 KRSLHDSTTSHNKSDLMRTNSDPQSAMRSRE 456


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 312 VIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHI 193
           +I+ ++  L SPLHL   RT+ ++ RH  +  ++  L+ I
Sbjct: 300 LIYQKDFHLISPLHLTTLRTVPSFQRHIEQRLEIGDLESI 339


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 252 LLTW--PRHFRRDRQLLPLKHIWRPL-TVCRHNLASSF*ISSIKNK 124
           LLTW     F R+R  L   H+   L T C H LAS+     I NK
Sbjct: 354 LLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNK 399


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +2

Query: 446 SL*RTHSTPAGRIRSREVRRLFNYLWLLEIEMRRDLRILYKI--------IFFPQGNK*L 601
           SL  T  +P   +R   V +++  L  +  E +    I YK+        + FP+GNK  
Sbjct: 256 SLFWTPESPRYLLRHNHVEKVYKILSRIHPEAK-PAEIAYKVSLIQEGVKVDFPEGNKFQ 314

Query: 602 HFVYSMK 622
           HF +S+K
Sbjct: 315 HFFHSLK 321


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 325 PLVRSDSFSKPATIFATSSFDISNPSDLAQTFPS*PAIAAFETH 194
           PLV ++S S P++        +SNPS  +   PS P  +  E H
Sbjct: 175 PLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECH 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,561,973
Number of Sequences: 5004
Number of extensions: 80985
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 858281342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)