Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D04_e604_08.seq
         (1529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865          104   2e-22
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297          104   2e-22
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           99   8e-21
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    36   0.064

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score =  104 bits (249), Expect = 2e-22
 Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
 Frame = +3

Query: 150 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 317
           MSWQ YVD+ LM       ++ AAI GHDG VWA+S  F +   +E+  I+  F+    L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60

Query: 318 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 494
              G+ +  T+Y+ + G    +IR K G  G+   KT QA+V+ +Y+EP+ P Q   VVE
Sbjct: 61  APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120

Query: 495 KLGDYLITCG 524
           +LGDYL+  G
Sbjct: 121 RLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score =  104 bits (249), Expect = 2e-22
 Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
 Frame = +3

Query: 150 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 317
           MSWQ YVD+ LM       ++ AAI GHDG VWA+S  F +   +E+  I+  F+    L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60

Query: 318 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 494
              G+ +  T+Y+ + G    +IR K G  G+   KT QA+V+ +Y+EP+ P Q   VVE
Sbjct: 61  APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120

Query: 495 KLGDYLITCG 524
           +LGDYL+  G
Sbjct: 121 RLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 99.1 bits (236), Expect = 8e-21
 Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
 Frame = +3

Query: 150 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 317
           MSWQ YVD  LM       ++ AAI GHDG+VWA+S  F +   +E+  I+  F+    L
Sbjct: 1   MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60

Query: 318 TSGGVTIAGTRYIYLSGTERI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 494
              G+ + GT+Y+ + G   + IR K G  G+   KT  ++++ +Y+EP+ P Q   +VE
Sbjct: 61  APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120

Query: 495 KLGDYLITCG 524
           +LGDYLI  G
Sbjct: 121 RLGDYLIEQG 130


>12_02_0932 +
           24519204-24519380,24520074-24520128,24520251-24522202,
           24522288-24522446,24522878-24523049,24523131-24523429,
           24524037-24524285
          Length = 1020

 Score = 36.3 bits (80), Expect = 0.064
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 243 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 335
           K+ GF+I  DE+  IV G +++ L+T GGVT
Sbjct: 92  KAAGFQICADELGSIVEGHDSKKLITHGGVT 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,781,717
Number of Sequences: 37544
Number of extensions: 536998
Number of successful extensions: 1084
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4919293792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)