Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D04_e604_08.seq
         (1529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   5e-09
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   55   1e-07
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  32   1.1  
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   5.6  
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)                 29   9.9  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 60.1 bits (139), Expect = 5e-09
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
 Frame = +3

Query: 198 VSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTE- 374
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+      TI G +Y+ L   + 
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63

Query: 375 -RIIRAKLGKVGVHCM-KTQQAVVISLYEEPI-QPQQAASVVEKLGDYLITCGY 527
            +I   KL   G  C+  T+QA+VI  YEE         +VVE+L  YL   GY
Sbjct: 64  SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
 Frame = +3

Query: 168 VDKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS-GGVTIAG 344
           VD+ L+ +  V+KA+I G +G  +A S GF +   E   ++A    +   T   GV +  
Sbjct: 450 VDESLLGTSQVAKASIHGLNGERYASSSGFVVLPSEAQVLIAAITKDPSPTYYKGVCLNR 509

Query: 345 TRYIYLS-GTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITC 521
           T+Y  +       +  + G  G   + T Q ++I  Y E + P   ++V EKL DY    
Sbjct: 510 TKYFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVN 569

Query: 522 GY 527
           G+
Sbjct: 570 GF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = +3

Query: 276 VAKIVAGFENESLLTSGGVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYE 455
           ++ +V  F + +     G+      Y  +   +  +  K  K G+  +KT   ++++LY 
Sbjct: 1   MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60

Query: 456 EPIQPQQAASVVEKLG 503
           + + P       EKLG
Sbjct: 61  QEMSPSICVEASEKLG 76


>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1554

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 720 IVTTHTLHSCLNSSHDDAINYQISKTNMNGPYHFIEYTKC 601
           ++ T  +++ LN ++ DA  YQ   TN++G   F +   C
Sbjct: 80  VIKTDDVYTILNFAYQDAGQYQCKATNLDGETIFTDPNAC 119


>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
          Length = 355

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 171 DKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 347
           D  LMA   +   A+A   G+ W+   G  I K    +++       + T+GGVTI GT
Sbjct: 174 DASLMAMAVLG--ALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,822,056
Number of Sequences: 59808
Number of extensions: 628778
Number of successful extensions: 1170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4976817448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)