Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D04_e604_08.seq
         (1529 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   5.8  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   5.8  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
 Frame = -2

Query: 316  RSDSFSKPATI------FATSSFDISNPSDLAQTFPS 224
            R+  FS P T        ATS+F ++NP+ L  TF S
Sbjct: 2824 RNFDFSSPGTWNALLGGIATSAFIVTNPNQLINTFRS 2860


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 280  ATSSFDISNPSDLAQTFPS*PAIAA 206
            ATSS+ + NPS L  +F S  ++AA
Sbjct: 2852 ATSSWILMNPSSLISSFVSITSVAA 2876


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,105
Number of Sequences: 2352
Number of extensions: 19982
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 179626590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)