Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D03_e596_07.seq
         (1559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    31   3.3  
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259...    29   10.0 

>03_01_0218 -
           1717246-1717892,1717995-1718163,1718262-1720022,
           1720531-1720610,1720854-1720981,1721004-1721012,
           1723701-1723742,1725891-1726002,1726358-1726514,
           1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 481 APCPPPRRSGGTLATAPSWLFCAGTIRNSHVRTAPAQANTCTS 353
           +P P      GTL TAPS L   G ++ +     P+ A+ C+S
Sbjct: 809 SPFPDDLPPIGTLVTAPSVLIHPGVLQENSTEVPPSPASWCSS 851


>08_01_1022 +
           10323158-10323393,10323486-10323531,10325887-10325941,
           10326027-10326107,10326189-10326400
          Length = 209

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 366 LACAGAVRTWLFRMVPAQNSQEGAVAKVPPLRR 464
           LA A +V   L  MV A      A+A++PPLRR
Sbjct: 25  LAAAESVGDHLAEMVAAAGEDPDAIAELPPLRR 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,327,957
Number of Sequences: 37544
Number of extensions: 429139
Number of successful extensions: 1303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5035314872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)