Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D03_e596_07.seq
         (1559 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form ...    32   4.9  
AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form ...    32   4.9  
AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form ...    32   4.9  
AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein.          32   4.9  
AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein.          32   4.9  
AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein.          32   4.9  
AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein.          32   4.9  
AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein.           32   4.9  

>AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form
            precursor transcript variant 3 protein.
          Length = 2809

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1017 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1054


>AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form
            precursor transcript variant 2 protein.
          Length = 2809

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1017 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1054


>AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form
            precursor transcript variant 1 protein.
          Length = 2809

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1017 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1054


>AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein.
          Length = 2809

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1017 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1054


>AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein.
          Length = 2809

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1017 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1054


>AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein.
          Length = 2809

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1017 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1054


>AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein.
          Length = 2809

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1017 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1054


>AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein.
          Length = 2816

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  YQLDAYITACAGVGLCRCCPDMAVSDGTCTK*PGGSRCQ 445
            + LDA    C  +  CR  PD+    GTC   PG   C+
Sbjct: 1024 FALDAQERNCTDIDECRISPDLC-GQGTCVNTPGSFECE 1061


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,133,189
Number of Sequences: 237096
Number of extensions: 2406681
Number of successful extensions: 6450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6446
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23193116150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)