Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D03_e596_07.seq
         (1559 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    47   6e-05
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    31   4.3  
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    31   4.3  
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    31   4.3  

>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
            endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 47.2 bits (107), Expect = 6e-05
 Identities = 24/63 (38%), Positives = 33/63 (52%)
 Frame = +1

Query: 370  LVQVLSGHGCFGWYLHKIARREPLPRCHHCDAAEDTAHHTLAECAAWEEPRRAVVAAXGP 549
            + Q L+ HGCF  YL +  R     +C +C  A +TA H L  C+ + E R  +VA  G 
Sbjct: 888  MTQFLTDHGCFRGYLCRF-RHVDTAQCLYCTDAVETAEHILLHCSRFAEERAQLVALAGS 946

Query: 550  DLS 558
             LS
Sbjct: 947  PLS 949


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 376 QVLSGHG--CFG-WYLHKIARREPLPRCHHCDAAEDTAHHTLAECAAWEEPRR 525
           +V S HG  C G  Y  +I RR    RC++C    + A+H  +ECA   +P+R
Sbjct: 100 RVSSRHGGSCQGSTYRPRINRRTRRMRCYNCG---EFANHIASECALGPQPKR 149


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 376 QVLSGHG--CFG-WYLHKIARREPLPRCHHCDAAEDTAHHTLAECAAWEEPRR 525
           +V S HG  C G  Y  +I RR    RC++C    + A+H  +ECA   +P+R
Sbjct: 100 RVSSRHGGSCQGSTYRPRINRRTRRMRCYNCG---EFANHIASECALGPQPKR 149


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 376 QVLSGHG--CFG-WYLHKIARREPLPRCHHCDAAEDTAHHTLAECAAWEEPRR 525
           +V S HG  C G  Y  +I RR    RC++C    + A+H  +ECA   +P+R
Sbjct: 100 RVSSRHGGSCQGSTYRPRINRRTRRMRCYNCG---EFANHIASECALGPQPKR 149


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,677,998
Number of Sequences: 53049
Number of extensions: 687754
Number of successful extensions: 1812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1810
length of database: 24,988,368
effective HSP length: 88
effective length of database: 20,320,056
effective search space used: 8757944136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)