Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D03_e596_07.seq
         (1559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    30   4.8  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    30   4.8  
At5g48550.1 68418.m06003 F-box family protein-related similar to...    29   8.3  
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel...    29   8.3  

>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
            subunit, putative similar to SP|O48653 DNA polymerase
            alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1492

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 260  NYVTCKICLMKXYIQSDLYHWLSYQLDAYITACA 361
            NY  C   L++ Y ++DLY  LSY      T C+
Sbjct: 1410 NYPNCNGTLLRKYTEADLYKQLSYFCHILDTQCS 1443


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 206 NDCKKKKFHN*-KCVPLHCNYVTCKICLMKXYIQSDLYHWLSYQLDA-YITACAG 364
           N CK  K H    C+ + CN+V C  C       + L + + Y+ D  Y+T C G
Sbjct: 365 NICKSTKVHKLLNCIEVECNFVICFTC-------ATLPYMVRYKHDEHYLTFCRG 412


>At5g48550.1 68418.m06003 F-box family protein-related similar to
           unknown protein (gb AAF19735.1); contains TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 427

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 347 CTHL-AGNLTNGKDHFVCXASLDIFYMLRNCNEEAH-TFSYEIFFFYN 210
           C H  AG    G+ HF+     D+ Y  R C +  H TF   I F YN
Sbjct: 355 CAHPHAGARLRGRLHFMLTGVDDLLYEFRYCFDTLHSTFDELIGFRYN 402


>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
           putative (CNGC15) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 406 WYLHKIARREPLPRCHHCDAAEDTAHHTLAECAAWEEPRR 525
           WYL  + R+E   R H C+  +    +   EC   E+P+R
Sbjct: 260 WYLLAVERQEACWR-HACNIEKQICQYRFFECRRLEDPQR 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,852
Number of Sequences: 28952
Number of extensions: 301848
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4192787520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)