Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D02_e588_08.seq
         (1425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    29   8.9  

>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 737 LVTLLICFVNFEILKVSLNIFD 802
           ++TLL CFVN + L+V  N+FD
Sbjct: 126 ILTLLDCFVNAKSLRVLQNVFD 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,613,892
Number of Sequences: 37544
Number of extensions: 455843
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4513220012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)