Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D02_e588_08.seq
         (1425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   2.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   4.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   6.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   6.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 564 CYFHRKTMGNWRLAIHKNMSINRWY 490
           CYF R+    W+ A+  N+S+++ +
Sbjct: 539 CYF-RRNAATWKNAVRHNLSLHKCF 562


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 224 LILIITSVRSLMVVIKPESLRNWQEKHY 141
           L+   T V++ +V I     R W E HY
Sbjct: 90  LVRTKTLVKNAIVTIDATPFRQWYEGHY 117


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 874 MYLYTNGN-XCLNFITITYKLNI 809
           MYL       C+N+   TYK+NI
Sbjct: 485 MYLRLKARRACMNYERFTYKINI 507


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 874 MYLYTNGN-XCLNFITITYKLNI 809
           MYL       C+N+   TYK+NI
Sbjct: 485 MYLRLKARRACMNYERFTYKINI 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,482
Number of Sequences: 438
Number of extensions: 6244
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 49706082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)