Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D01_e580_07.seq
         (1550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    33   0.080
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   7.0  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 33.5 bits (73), Expect = 0.080
 Identities = 24/91 (26%), Positives = 46/91 (50%)
 Frame = +3

Query: 123 LTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWNFAFHMPTFLRVYLL 302
           LTWLRY+ ++ LYP+G   E +++L++           I+    W+    +   L   L+
Sbjct: 133 LTWLRYNTFLILYPIGAGSEFLLVLKS----------RIAAQYVWS----LNKLLWPILM 178

Query: 303 VLTFPGMYLVMKHMHKLRTRKLRSKVVIKKS 395
            +  PG+Y++  HM   R RK+  +   +++
Sbjct: 179 SIYPPGLYIMYTHMLAQR-RKISKRAAARRT 208


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 267 RRSSTNSATKS*TLASPQSMVYYEGLQLPRIVYLEGTEVSK*STEAMLKCRSL 109
           + S+TN + KS +  SPQS      LQLP    +     S+ S + +L+  SL
Sbjct: 71  KESATNQSGKSSSSISPQSKKIKVALQLPGAARIIDEASSETSIKQLLERHSL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,627,682
Number of Sequences: 5004
Number of extensions: 82562
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 872156560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)