Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_D01_e580_07.seq
(1550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272... 59 8e-09
01_01_0338 + 2718212-2718251,2718519-2718607,2718997-2719050,271... 57 4e-08
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 55 2e-07
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902... 53 5e-07
08_02_0558 + 18668856-18668926,18669064-18669175,18669834-186698... 50 5e-06
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 35 0.20
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275... 33 0.61
01_01_0343 + 2744123-2744311,2745238-2745291,2745517-2745587,274... 33 0.61
>01_01_0339 +
2720647-2720790,2721241-2721282,2721580-2721761,
2721828-2721939,2722814-2722867,2723077-2723115,
2723116-2723186,2723313-2723394,2723493-2723589,
2723727-2723797
Length = 297
Score = 59.3 bits (137), Expect = 8e-09
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +3
Query: 123 LTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWNFAFHMPTFLRVYLL 302
L WLRYS +I YP+G++ E +I P+ + + ++ I +PN WNF+F + +L+
Sbjct: 211 LLWLRYSTFIVCYPVGMVSEVGLIYIAFPFMKASEKYCIGMPNKWNFSFDY-FYFSTFLM 269
Query: 303 VLTFPGMYLVMKHMHKLRTRKL 368
L P +++HM R + L
Sbjct: 270 ALYVPVFPYLLRHMVAQRKKAL 291
>01_01_0338 +
2718212-2718251,2718519-2718607,2718997-2719050,
2719201-2719271,2719375-2719456,2719561-2719657,
2719752-2719873
Length = 184
Score = 56.8 bits (131), Expect = 4e-08
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +3
Query: 123 LTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWNFAFHMPTFLRVYLL 302
L WLRYS ++ LYP GI E +I +PY + T ++ + +PN WNF+F ++ + L
Sbjct: 81 LLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFDF-SYASILSL 139
Query: 303 VLTFPG 320
+ PG
Sbjct: 140 AVYVPG 145
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/82 (28%), Positives = 45/82 (54%)
Frame = +3
Query: 123 LTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWNFAFHMPTFLRVYLL 302
L WLRYS +I +P+G++ E + +P+ + + ++ + +PN WNF+F+ + V+ +
Sbjct: 148 LLWLRYSTFIACFPVGVVSEICLAYTVLPFMKASEKYCLRMPNKWNFSFNY-FYANVFFM 206
Query: 303 VLTFPGMYLVMKHMHKLRTRKL 368
P + + HM R + L
Sbjct: 207 AFYVPVVPYLFHHMIAQRKKAL 228
>04_03_0113 +
11388585-11388655,11388741-11388852,11390182-11390235,
11390386-11390456,11390560-11390641,11390741-11390837,
11390914-11391053
Length = 208
Score = 53.2 bits (122), Expect = 5e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 123 LTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWNFAF 269
L WLRYS ++ LYP GI E +I +PY + + ++ + +PN WNF+F
Sbjct: 99 LLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWNFSF 147
>08_02_0558 +
18668856-18668926,18669064-18669175,18669834-18669887,
18670121-18670191,18670291-18670372,18670463-18670559,
18670928-18670998
Length = 185
Score = 50.0 bits (114), Expect = 5e-06
Identities = 23/82 (28%), Positives = 46/82 (56%)
Frame = +3
Query: 123 LTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWNFAFHMPTFLRVYLL 302
L WLRYS +I P+G + E +I +P+ + + ++ + +PN WNF+F+ + ++ +
Sbjct: 99 LLWLRYSTFIVCLPVGTVSEVGLIYIVLPFMKASGKYCLRMPNKWNFSFNY-FYASIFFM 157
Query: 303 VLTFPGMYLVMKHMHKLRTRKL 368
VL P + +++ R + L
Sbjct: 158 VLYAPVYPRLFRYLIAQRKKAL 179
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 34.7 bits (76), Expect = 0.20
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 117 YILTWLRYSIWIPLYPLGI-LCEAVVILRNIPYFEETLRFTISLPNSWNFAFHMPTFLRV 293
Y+ RY+ +IPLYP+G+ E + + +P+ +E ++ ++ ++H +FL
Sbjct: 116 YLFAPCRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYS-GFFGKFSMSYH--SFLVA 172
Query: 294 YLLVLTFPGMYLVMKHMHKLRTRKLRSKVVIKK 392
L V F M L + H+ K R KL KK
Sbjct: 173 VLAVYPFLWMKLYL-HVFKQRRSKLGKSGGAKK 204
>01_01_0346 +
2756652-2756830,2759178-2759405,2759818-2759905,
2759998-2760094,2760353-2760393
Length = 210
Score = 33.1 bits (72), Expect = 0.61
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +3
Query: 138 YSIWIPLYPLGILCEAVVILRNIPYFE-ETLRFTIS-LPNSWNFAFH 272
YS +I +P+G++CE V+I +P+ E + ++ S + W+F+F+
Sbjct: 137 YSTFIVCFPVGMVCEVVLIYIALPFMEMKAQQYQASEKSDKWSFSFN 183
>01_01_0343 +
2744123-2744311,2745238-2745291,2745517-2745587,
2745704-2745785,2746242-2746340
Length = 164
Score = 33.1 bits (72), Expect = 0.61
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 123 LTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLR 230
L WLRYS +I +P+G++ E ++ +P+ + LR
Sbjct: 101 LLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKLQLR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,211,787
Number of Sequences: 37544
Number of extensions: 527393
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5000508548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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