Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D01_e580_07.seq
         (1550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-14|AAB69975.2|  218|Caenorhabditis elegans Hypothetical...    40   0.004
Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical pr...    40   0.006
Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical pr...    32   0.95 
U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical p...    32   1.3  
AF125971-3|AAN73292.1|  152|Caenorhabditis elegans Hypothetical ...    29   8.9  
AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical ...    29   8.9  

>AF022985-14|AAB69975.2|  218|Caenorhabditis elegans Hypothetical
           protein T15B7.2 protein.
          Length = 218

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 117 YILTWLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWN--FAFHMPTFLR 290
           Y L +LRY+++  LYP+G+  E + +  ++   +E    T+ +PN  N   +F     + 
Sbjct: 128 YFLLYLRYTLFYVLYPMGVSGELLTLFASLNEVDEKKILTLEMPNRLNMGISFWWVLIIA 187

Query: 291 VYLLVLTFPGMYLVM 335
               +  FP +Y  M
Sbjct: 188 ALSYIPGFPQLYFYM 202


>Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical
           protein R10E4.9 protein.
          Length = 202

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 81  GSTYL-NCTXKEIYILTWLRYSIWIPLYPLGILCEAVVIL 197
           G  YL NC       LTWLRY+ +  LYP+G  CEA+V +
Sbjct: 109 GPYYLSNCLGTPNRSLTWLRYNAFKVLYPVGFTCEALVFI 148


>Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical protein
            F58G1.1 protein.
          Length = 965

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +2

Query: 164  SRYTMRGSCNPS*YTIL*GDAKVHDFVAEFVELRLPHAHIP*GVSPSLDLPGNVSRDEA 340
            S  T++G+     YT+L  DAKV     E +  +L H H   G+  SL  P  V+ + A
Sbjct: 858  SHITLQGTAKTPLYTVLADDAKVSMTALEDITYKLCHLHQIVGLPTSLPTPLYVANEYA 916


>U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical
           protein T22F3.7 protein.
          Length = 448

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 672 LFSKYFFLCKKEKMNL-FTSIKSTDYTIYEIVTDNNVYYLWPLVG*GYAFYIMFDILYV 499
           L   + F+C K  ++  FT I  T Y+IY+  + +  + +W +        I  +++YV
Sbjct: 59  LIINFTFICMKHDLSDGFTEINGTKYSIYDYTSKDKTWIIWSVAAGTIIGTIPLNMMYV 117


>AF125971-3|AAN73292.1|  152|Caenorhabditis elegans Hypothetical
           protein Y4C6B.4b protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 660 YFFLCKKEKMNLFTSIKSTDYTIYEIVTDNNVYYLWPLVG*GYAFYIMFDILYV 499
           + F+C K+ ++  T +  T  +IY+       Y LW +           +ILYV
Sbjct: 33  FTFICMKDDLSQTTEVNGTLKSIYDYTPTEKKYILWAVAFGTMVGTFPINILYV 86


>AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical
           protein Y4C6B.4a protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 660 YFFLCKKEKMNLFTSIKSTDYTIYEIVTDNNVYYLWPLVG*GYAFYIMFDILYV 499
           + F+C K+ ++  T +  T  +IY+       Y LW +           +ILYV
Sbjct: 33  FTFICMKDDLSQTTEVNGTLKSIYDYTPTEKKYILWAVAFGTMVGTFPINILYV 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,888,237
Number of Sequences: 27780
Number of extensions: 484152
Number of successful extensions: 961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4473305038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)