Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D01_e580_07.seq
         (1550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10480.1 68418.m01214 protein tyrosine phosphatase-like prote...    50   5e-06

>At5g10480.1 68418.m01214 protein tyrosine phosphatase-like protein,
           putative (PAS2) identical to PEPINO/PASTICCINO2 protein
           GI:24411193, GI:24575153 from [Arabidopsis thaliana];
           contains Pfam:04387: protein tyrosine phosphatase-like
           protein
          Length = 221

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 25/80 (31%), Positives = 44/80 (55%)
 Frame = +3

Query: 129 WLRYSIWIPLYPLGILCEAVVILRNIPYFEETLRFTISLPNSWNFAFHMPTFLRVYLLVL 308
           WLRYS ++ LYP GI  E  +I   +P+ + +  +++ +PN  NF+F    +  + +L +
Sbjct: 137 WLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDF-FYATILVLAI 195

Query: 309 TFPGMYLVMKHMHKLRTRKL 368
             PG   + ++M   R R L
Sbjct: 196 YVPGSPHMYRYMLGQRKRAL 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,201,648
Number of Sequences: 28952
Number of extensions: 435055
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4163871744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)