BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030731E7_C12_e667_06.seq (1513 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 100 6e-21 04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 62 1e-09 09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577... 57 3e-08 07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568... 38 0.021 12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 29 7.3 07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310... 29 7.3 >04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 Length = 234 Score = 99.5 bits (237), Expect = 6e-21 Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 4/123 (3%) Frame = +2 Query: 50 PRAAGNSARGCSAATYL*STKKAAXPSSWREEE----ITRTKEEAIQIIKGYRTEIVNRE 217 P AG + A+ L + + +SWR+ E T+++A + + R +IV E Sbjct: 112 PSTAGGGEKKLRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGE 171 Query: 218 VGFDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIIL 397 F++VA SDC+SAKR GDLG F++G+MQK FE LK+G++S +V+T SGVHIIL Sbjct: 172 RKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTDSGVHIIL 231 Query: 398 RTA 406 RTA Sbjct: 232 RTA 234 >04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 Length = 327 Score = 61.7 bits (143), Expect = 1e-09 Identities = 27/41 (65%), Positives = 32/41 (78%) Frame = +2 Query: 284 GRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILRTA 406 G F + QMQKPFED F LK+G++S V+T SGVHIILRTA Sbjct: 287 GTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 327 >09_04_0095 - 14556508-14556550,14556824-14556966,14557703-14557744, 14557940-14558049,14558369-14558519 Length = 162 Score = 57.2 bits (132), Expect = 3e-08 Identities = 25/55 (45%), Positives = 36/55 (65%) Frame = +2 Query: 233 VARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIIL 397 +A+ YS+C S K+ GDLG F +G+M PF+DVAF+ +G S ++ G H IL Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGATSAPFKSTHGYHFIL 156 >07_03_1741 + 29156076-29156316,29156554-29156676,29156784-29156875, 29157577-29157677,29157752-29157862,29158254-29158362, 29158589-29158639,29158758-29158838 Length = 302 Score = 37.9 bits (84), Expect = 0.021 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = +2 Query: 164 EEAIQIIKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLK 343 E+ ++++ I+ ++A YS C S + G LG ++GQM FE+ AF Sbjct: 105 EQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAP 164 Query: 344 IGQLSQLVETQSGVHII 394 + ++ + +T+ G H++ Sbjct: 165 LNKVVR-CKTKFGWHLL 180 >12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904, 9911965-9913737 Length = 713 Score = 29.5 bits (63), Expect = 7.3 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = +2 Query: 143 EEITRTKEEAIQIIKGYRTEIVNREVGFDEVARLYSDCSSAKR--DGDLGRFKKGQMQKP 316 E + ++ EAI+ ++ R E+ + E+ +E + +AKR +G+L R+++ + +K Sbjct: 578 EAVRASENEAIKKLEAARKEMEDMELATEEALKRAEMAEAAKRAVEGELRRWREKEQKKA 637 Query: 317 FE 322 E Sbjct: 638 AE 639 >07_03_1434 + 26529043-26529927,26530385-26530742,26530820-26531007, 26531082-26531271,26531343-26531447,26531521-26531597, 26531628-26531972 Length = 715 Score = 29.5 bits (63), Expect = 7.3 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = +2 Query: 524 LSPRGCTRVSYFLHRILIFF-IRNHYLFMNFVFFFKRNHN 640 L+P ++ F+H F IR H+ +FF K HN Sbjct: 88 LNPNSIVHIANFVHACEAFLGIRPHFALFRRIFFLKPQHN 127 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 30,351,986 Number of Sequences: 37544 Number of extensions: 527491 Number of successful extensions: 989 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 961 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 988 length of database: 14,793,348 effective HSP length: 85 effective length of database: 11,602,108 effective search space used: 4849681144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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