Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C12_e667_06.seq
         (1513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916    100   6e-21
04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329           62   1e-09
09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577...    57   3e-08
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568...    38   0.021
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    29   7.3  
07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310...    29   7.3  

>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 99.5 bits (237), Expect = 6e-21
 Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
 Frame = +2

Query: 50  PRAAGNSARGCSAATYL*STKKAAXPSSWREEE----ITRTKEEAIQIIKGYRTEIVNRE 217
           P  AG   +   A+  L   + +   +SWR+ E       T+++A  + +  R +IV  E
Sbjct: 112 PSTAGGGEKKLRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGE 171

Query: 218 VGFDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIIL 397
             F++VA   SDC+SAKR GDLG F++G+MQK FE     LK+G++S +V+T SGVHIIL
Sbjct: 172 RKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTDSGVHIIL 231

Query: 398 RTA 406
           RTA
Sbjct: 232 RTA 234


>04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329
          Length = 327

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +2

Query: 284 GRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILRTA 406
           G F + QMQKPFED  F LK+G++S  V+T SGVHIILRTA
Sbjct: 287 GTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 327


>09_04_0095 -
           14556508-14556550,14556824-14556966,14557703-14557744,
           14557940-14558049,14558369-14558519
          Length = 162

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 233 VARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIIL 397
           +A+ YS+C S K+ GDLG F +G+M  PF+DVAF+  +G  S   ++  G H IL
Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGATSAPFKSTHGYHFIL 156


>07_03_1741 +
           29156076-29156316,29156554-29156676,29156784-29156875,
           29157577-29157677,29157752-29157862,29158254-29158362,
           29158589-29158639,29158758-29158838
          Length = 302

 Score = 37.9 bits (84), Expect = 0.021
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +2

Query: 164 EEAIQIIKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLK 343
           E+ ++++      I+       ++A  YS C S +  G LG  ++GQM   FE+ AF   
Sbjct: 105 EQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAP 164

Query: 344 IGQLSQLVETQSGVHII 394
           + ++ +  +T+ G H++
Sbjct: 165 LNKVVR-CKTKFGWHLL 180


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +2

Query: 143 EEITRTKEEAIQIIKGYRTEIVNREVGFDEVARLYSDCSSAKR--DGDLGRFKKGQMQKP 316
           E +  ++ EAI+ ++  R E+ + E+  +E  +      +AKR  +G+L R+++ + +K 
Sbjct: 578 EAVRASENEAIKKLEAARKEMEDMELATEEALKRAEMAEAAKRAVEGELRRWREKEQKKA 637

Query: 317 FE 322
            E
Sbjct: 638 AE 639


>07_03_1434 +
           26529043-26529927,26530385-26530742,26530820-26531007,
           26531082-26531271,26531343-26531447,26531521-26531597,
           26531628-26531972
          Length = 715

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 524 LSPRGCTRVSYFLHRILIFF-IRNHYLFMNFVFFFKRNHN 640
           L+P     ++ F+H    F  IR H+     +FF K  HN
Sbjct: 88  LNPNSIVHIANFVHACEAFLGIRPHFALFRRIFFLKPQHN 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,351,986
Number of Sequences: 37544
Number of extensions: 527491
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)