Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C12_e667_06.seq
         (1513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55896| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             29   7.4  

>SB_55896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 1  SWXXPAVAAALXTSGXPPGCRXFGTRVQC 87
          +W   AVAAAL     PPGCR   + VQC
Sbjct: 3  NWSSTAVAAALELVD-PPGCRNSISLVQC 30


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 323 LRTASASVPS*NGPNHHRV*QMSNQSTDARLHRTRPHDSQSRCDN 189
           L +A   VPS   P+  +    SN +  AR  R RPHD  S  D+
Sbjct: 168 LYSAQGRVPSEKEPSKAQKVAKSNPTQPARSLRKRPHDCDSTTDS 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,380,333
Number of Sequences: 59808
Number of extensions: 590491
Number of successful extensions: 1128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)