Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C12_e667_06.seq
         (1513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-15|AAF60409.1|  168|Caenorhabditis elegans Hypothetical...   106   4e-23
AL117203-11|CAB55116.1|  126|Caenorhabditis elegans Hypothetical...    40   0.005
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    30   3.7  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    30   3.7  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    30   4.9  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    30   4.9  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    30   4.9  

>AC024746-15|AAF60409.1|  168|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.13 protein.
          Length = 168

 Score =  106 bits (255), Expect = 4e-23
 Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 10/102 (9%)
 Frame = +2

Query: 125 PSSWREEEITRTKEEAIQIIKG-------YRTEIV---NREVGFDEVARLYSDCSSAKRD 274
           PSSWR + ITR+K++AI I+K        Y  E+    N E  F E+A+ +SDCSSAKR 
Sbjct: 65  PSSWRSDHITRSKDDAINILKSADLRNFHYEKELKDASNIEGKFRELAKQFSDCSSAKRG 124

Query: 275 GDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILR 400
           GDLG F++ QMQKPFED +F L+IG++S +V+T SGVH+I R
Sbjct: 125 GDLGPFERRQMQKPFEDASFALEIGEMSDIVDTSSGVHLIYR 166


>AL117203-11|CAB55116.1|  126|Caenorhabditis elegans Hypothetical
           protein Y48C3A.16 protein.
          Length = 126

 Score = 39.9 bits (89), Expect = 0.005
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = +2

Query: 224 FDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQ------LVETQSGV 385
           F+EVA  YS+   A+  GDLG   +G M  PF+D AF L      +       V+T+ G 
Sbjct: 59  FNEVAAQYSE-DKARSGGDLGWMTRGSMVGPFQDAAFALSNSSCDKPIYTDPPVKTKFGY 117

Query: 386 HIIL 397
           H+I+
Sbjct: 118 HVIM 121


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 143  EEITRTKEEAIQIIKGYRTEIVNREVGFDEVARLYSD 253
            E  T+ KEEA++I K   ++I + E+  D   R Y+D
Sbjct: 1615 EAETKQKEEALRIKKKLESDINDLEIALDHANRAYAD 1651


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 143  EEITRTKEEAIQIIKGYRTEIVNREVGFDEVARLYSD 253
            E  T+ KEEA++I K   ++I + E+  D   R Y+D
Sbjct: 1615 EAETKQKEEALRIKKKLESDINDLEIALDHANRAYAD 1651


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
           presynaptic activity protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 655 KSTPKLSTKKVPLKSVPEITHYKKTDQKXSLISM 756
           +S  + ST K  +K VP+  H+KK D   SL S+
Sbjct: 113 QSFDRRSTPKDEIKKVPDDAHHKKRDSHVSLTSL 146


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform b protein.
          Length = 1408

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 655 KSTPKLSTKKVPLKSVPEITHYKKTDQKXSLISM 756
           +S  + ST K  +K VP+  H+KK D   SL S+
Sbjct: 113 QSFDRRSTPKDEIKKVPDDAHHKKRDSHVSLTSL 146


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform a protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 655 KSTPKLSTKKVPLKSVPEITHYKKTDQKXSLISM 756
           +S  + ST K  +K VP+  H+KK D   SL S+
Sbjct: 113 QSFDRRSTPKDEIKKVPDDAHHKKRDSHVSLTSL 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,240,431
Number of Sequences: 27780
Number of extensions: 456397
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)