Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C12_e667_06.seq
         (1513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI...   109   5e-24
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI...    59   7e-09
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei...    41   0.002
At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase, p...    30   4.6  
At1g35580.2 68414.m04418 beta-fructofuranosidase, putative / inv...    29   8.0  
At1g35580.1 68414.m04417 beta-fructofuranosidase, putative / inv...    29   8.0  

>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
           / cyclophilin / rotamase identical to Chain A, Solution
           Structure Of Pin1at From Arabidopsis Thaliana
           GI:22218833; contains Pfam profile PF00639: PPIC-type
           PPIASE domain
          Length = 119

 Score =  109 bits (262), Expect = 5e-24
 Identities = 51/97 (52%), Positives = 70/97 (72%), Gaps = 4/97 (4%)
 Frame = +2

Query: 128 SSWREEE----ITRTKEEAIQIIKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFK 295
           +SW++ E    +T T+E A++ +K  R +IV+ +  F+EVA   SDCSSAKR GDLG F 
Sbjct: 23  ASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFG 82

Query: 296 KGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILRTA 406
           +GQMQKPFE+  + LK+G +S +V+T SGVHII RTA
Sbjct: 83  RGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119


>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
           PPIC-type family protein similar to SP|Q9Y237
           Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           (EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin 14)
           {Homo sapiens}; contains Pfam profile PF00639: PPIC-type
           PPIASE domain
          Length = 142

 Score = 59.3 bits (137), Expect = 7e-09
 Identities = 27/58 (46%), Positives = 37/58 (63%)
 Frame = +2

Query: 224 FDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIIL 397
           F ++A  YS+C S K+ GDLG F +G+M  PF+DVAF   +G  S   ++  G HIIL
Sbjct: 79  FAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIIL 136


>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
           PPIC-type PPIASE domain-containing protein low
           similarity to MPT-synthase sulfurylase [Synechococcus
           sp. PCC 7942] GI:2950364; contains Pfam profiles
           PF00581: Rhodanese-like domain, PF00639: PPIC-type
           PPIASE domain; identical to cDNA peptidyl-prolyl
           cis-trans isomerase GI:2246379
          Length = 299

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 22/55 (40%), Positives = 32/55 (58%)
 Frame = +2

Query: 230 EVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHII 394
           ++A  YS C S K  G LG  K GQM   FE+ AF  ++ Q+ +   TQ G+H++
Sbjct: 126 DLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKAELNQVVR-CRTQFGLHLL 179


>At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076
          Length = 289

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 247 VQTR--DFIEPDLTIHNLGAITFYNLYCFLLSASDFLFTPGRW 125
           +QTR  +F  PDL I   G     N + + L+ ++F F+P  W
Sbjct: 221 LQTRCTEFPSPDLLIRTSGEQRISNFFLWQLAYTEFFFSPVLW 263


>At1g35580.2 68414.m04418 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 551

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 182 IKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFKKGQMQK 313
           IK  R +I  R V   E +RL+ DC     DG LGR+   Q +K
Sbjct: 463 IKTGRPQIARRAVDLIE-SRLHRDCWPEYYDGKLGRYVGKQARK 505


>At1g35580.1 68414.m04417 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 551

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 182 IKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFKKGQMQK 313
           IK  R +I  R V   E +RL+ DC     DG LGR+   Q +K
Sbjct: 463 IKTGRPQIARRAVDLIE-SRLHRDCWPEYYDGKLGRYVGKQARK 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,887,299
Number of Sequences: 28952
Number of extensions: 422053
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)