Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C11_e659_05.seq
         (1558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    92   9e-19
02_01_0302 - 2021221-2023305                                           30   5.7  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   9.9  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   9.9  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    29   9.9  
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   9.9  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 92.3 bits (219), Expect = 9e-19
 Identities = 46/109 (42%), Positives = 58/109 (53%)
 Frame = +3

Query: 147 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 326
           S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI +
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILS 61

Query: 327 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 473
           +GSG                                   DDDMGF LFD
Sbjct: 62  VGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/65 (24%), Positives = 18/65 (27%)
 Frame = +2

Query: 1352 PNREKTKPCHXPXXXDPXXPXXPXXXVSXXXPPSTXTXXYXXXIXLSXXSLSXXSXXPPS 1531
            P+     P H P    P  P  P   V+   PP T              S       PPS
Sbjct: 522  PSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPSTPPS 581

Query: 1532 XXXQP 1546
                P
Sbjct: 582  SGSPP 586


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 691 LNRLAAHPPFASWRNSEEARTDRPSQQLRXLNG 789
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 691 LNRLAAHPPFASWRNSEEARTDRPSQQLRXLNG 789
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


>06_03_0635 - 22971502-22973840,22974112-22974403,22974639-22975162,
            22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 661  VTGKTLXVTHLNRLAAHPPFASWRNSEEARTDRPSQQLRXLNGEWQIVSXNXLLKFAL 834
            +TG  +    +    A PP  S+  SE+A+     QQ R  NG   +V+   LL   L
Sbjct: 1068 ITGLGVAGQEMMATLASPPSLSYNKSEDAQIGNDQQQPRGDNGIASVVTGLLLLPHQL 1125


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 120 LARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKAL 293
           LAR  +K A KA+  C Y AL  + D+  +T E+ S +L +     E  W   F   L
Sbjct: 365 LARQWYKAAVKADPLC-YEALECLVDNYMLTCEEESELLSSLKFGKEDGWLSAFYSCL 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,440,214
Number of Sequences: 37544
Number of extensions: 561476
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)