Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C06_e619_06.seq
         (1521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   128   2e-30
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   124   2e-29

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  128 bits (309), Expect = 2e-30
 Identities = 58/121 (47%), Positives = 84/121 (69%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+  + F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P+G
Sbjct: 8   KKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNG 67

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSX 449
            +  LV NV ++E+L+M N+ Y AEI  G+   + R    E+A  L ++ TNA A++RS 
Sbjct: 68  LKAFLVRNVSDVELLLMHNKTYAAEIA-GNVSARKRVEIVEKARALGVKVTNAGAKVRSQ 126

Query: 450 D 452
           +
Sbjct: 127 E 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  124 bits (300), Expect = 2e-29
 Identities = 58/121 (47%), Positives = 82/121 (67%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+  + F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P+G
Sbjct: 8   KKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNG 67

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSX 449
            +  LV NV ++E+L+M N+ Y AEI    S  K R    E+A  L ++ TNA A++RS 
Sbjct: 68  LKAFLVRNVSDVELLLMHNKTYAAEIASNVSARK-RVEIVEKARALGVKVTNAGAKVRSQ 126

Query: 450 D 452
           +
Sbjct: 127 E 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,484
Number of Sequences: 5004
Number of extensions: 27373
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 852334820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)