Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C06_e619_06.seq
         (1521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    149   4e-36
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   138   8e-33
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   136   6e-32
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   114   2e-25

>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  149 bits (362), Expect = 4e-36
 Identities = 74/121 (61%), Positives = 88/121 (72%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+  ++F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LP+ 
Sbjct: 12  KKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNK 71

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSX 449
           F+K +VHNV ELE+LMM NR YCAEI H  S  K RK   ERA  L I  TN  ARLRS 
Sbjct: 72  FKKFVVHNVSELELLMMHNRMYCAEIAHNVS-TKKRKEIVERAAQLDIVVTNKLARLRSQ 130

Query: 450 D 452
           +
Sbjct: 131 E 131


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  138 bits (335), Expect = 8e-33
 Identities = 67/108 (62%), Positives = 80/108 (74%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+  ++F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LP+ 
Sbjct: 12  KKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNK 71

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXI 413
           F+K +VHNV ELE+LMM NR YCAEI H  S  K RK   ERA  L I
Sbjct: 72  FKKFVVHNVSELELLMMHNRTYCAEIAHNVS-TKKRKEIVERAAQLDI 118


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  136 bits (328), Expect = 6e-32
 Identities = 65/101 (64%), Positives = 76/101 (75%)
 Frame = +3

Query: 150 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 329
           +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158

Query: 330 XYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSXD 452
            YCAEI H  S  K RK   ERA  L I  TN  ARLRS +
Sbjct: 159 TYCAEIAHNVS-TKKRKEIVERAAQLDIVVTNKLARLRSQE 198


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  114 bits (275), Expect = 2e-25
 Identities = 52/80 (65%), Positives = 65/80 (81%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+  ++F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LP+ 
Sbjct: 334 KKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNK 393

Query: 270 FRKVLVHNVRELEILMMQNR 329
           F+K +VHNV ELE+LMM NR
Sbjct: 394 FKKFVVHNVSELELLMMHNR 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,660
Number of Sequences: 37544
Number of extensions: 189232
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)