Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C06_e619_06.seq
         (1521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   138   7e-33
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   5.0  
AF016416-6|AAB65270.1|  223|Caenorhabditis elegans Hypothetical ...    29   8.7  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  138 bits (335), Expect = 7e-33
 Identities = 63/116 (54%), Positives = 88/116 (75%)
 Frame = +3

Query: 105 RFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVL 284
           +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP+G++KVL
Sbjct: 18  KFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLPNGYKKVL 77

Query: 285 VHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSXD 452
           V NV++L++L+MQ+  Y  EI HG S  K+RK   ERA  L I+ TN  ARLR+ +
Sbjct: 78  VQNVKDLDMLLMQSYKYIGEIGHGVS-AKSRKGIVERAAQLNIKLTNGNARLRTEE 132


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 204 QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 326
           QYLM NI        R   PSGF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>AF016416-6|AAB65270.1|  223|Caenorhabditis elegans Hypothetical
           protein F29A7.8 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +1

Query: 151 TGVNREVSTTEYVGASRVNT*CPTL---VMVQIRRPVTCYPAVFVKSWSTTFANWRS**C 321
           T    E  T   + A  V+  CP+L   ++  +  P +    +F  +WS+    W    C
Sbjct: 85  TKTGEEDGTVVGIKAQLVSGQCPSLQNKIIASLAPPQSFQNQLFSYTWSSDINGWSVTEC 144

Query: 322 RTGXTARKSXMXVLLXKTG 378
            T    R S + + +  TG
Sbjct: 145 STSIIVRSSSVTLCVKITG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,109
Number of Sequences: 27780
Number of extensions: 157295
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4369516058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)