Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C06_e619_06.seq
         (1521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   200   3e-53

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  200 bits (488), Expect = 3e-53
 Identities = 93/121 (76%), Positives = 104/121 (85%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+  ++FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP+G
Sbjct: 13  KKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTG 72

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSX 449
           FRKVLVHNV+ELE+LMMQNR +CAEI HG S  K RK+  ERA  L IR T A+ARLRS 
Sbjct: 73  FRKVLVHNVKELEVLMMQNRKFCAEIAHGGS-SKKRKSIVERAQQLSIRVTYASARLRSQ 131

Query: 450 D 452
           +
Sbjct: 132 E 132



 Score = 34.7 bits (76), Expect = 0.002
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 53  MAIRPVYXPTIVKKRRRK 106
           MAIRPVY PTIVKKR +K
Sbjct: 1   MAIRPVYRPTIVKKRTKK 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,088
Number of Sequences: 438
Number of extensions: 2050
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53233125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)