Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C06_e619_06.seq
         (1521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...   155   1e-37
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)           152   7e-37
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)           152   7e-37

>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score =  155 bits (375), Expect = 1e-37
 Identities = 73/121 (60%), Positives = 89/121 (73%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+   +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYGS+KKTRH LP+G
Sbjct: 12  KKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNG 71

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSX 449
           F+K +VHN  ELE+LMM NR YCAEI H  S  K RKA  ERA  L +  TN  ARLRS 
Sbjct: 72  FKKFVVHNTSELELLMMHNRTYCAEIAHNVS-TKKRKAIVERASQLDVVVTNRLARLRSQ 130

Query: 450 D 452
           +
Sbjct: 131 E 131


>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  152 bits (368), Expect = 7e-37
 Identities = 71/121 (58%), Positives = 88/121 (72%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+   +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYGS+KKTRH LP+G
Sbjct: 12  KKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNG 71

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSX 449
           F+K +VHN  ELE+LMM NR YCAEI H  S  K RKA  ERA  L +  +N   RLRS 
Sbjct: 72  FKKFIVHNTSELELLMMHNRTYCAEIAHNIS-TKKRKAIVERASQLDVVVSNKLGRLRSQ 130

Query: 450 D 452
           +
Sbjct: 131 E 131


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  152 bits (368), Expect = 7e-37
 Identities = 71/121 (58%), Positives = 88/121 (72%)
 Frame = +3

Query: 90  KRGDERFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSG 269
           K+   +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYGS+KKTRH LP+G
Sbjct: 12  KKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNG 71

Query: 270 FRKVLVHNVRELEILMMQNRXYCAEIXHGSSXXKNRKAXXERAXXLXIRXTNAAARLRSX 449
           F+K +VHN  ELE+LMM NR YCAEI H  S  K RKA  ERA  L +  +N   RLRS 
Sbjct: 72  FKKFIVHNTSELELLMMHNRTYCAEIAHNIS-TKKRKAIVERASQLDVVVSNKLGRLRSQ 130

Query: 450 D 452
           +
Sbjct: 131 E 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,570,682
Number of Sequences: 28952
Number of extensions: 149637
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)