Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C05_e611_05.seq
         (1542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.56 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.7  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    29   2.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +3

Query: 1395 PXPPPXVXXXPXXLXFXQXXPPXXLXFXXPPGXPXILXXXAXPLPPPPP 1541
            P PPP V             PP  +    PP  P      A P PPPPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 21/66 (31%), Positives = 22/66 (33%)
 Frame = -2

Query: 1115 GGGXPXKRXQXGGAPPPSXGXPXXGGFXXXXGXAGKNGGXGNXXRMGGXXPXKPPMXGXX 936
            GGG        GG PP   G    GGF       G +GG G     GG         G  
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG--PGGFEGGPGGFGGGP 244

Query: 935  XXFXGG 918
              F GG
Sbjct: 245  GGFGGG 250


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
 Frame = -3

Query: 334 SRRFTKSLIIAYFVNYM---LKPISTVYIFI 251
           SR FT+ L+  Y++NY+   L+ + TV++F+
Sbjct: 126 SRHFTQRLVTLYYLNYLTKYLELMDTVFLFL 156


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 19/80 (23%), Positives = 21/80 (26%)
 Frame = +1

Query: 994  PXPPFFPAXPXXXXKPPXKGXPXXGGGAPPXXXLLXGXPPPXLKXLF*YPXPXPXXXXXP 1173
            P P   P  P      P K  P      PP         PP    L     P P     P
Sbjct: 145  PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204

Query: 1174 PXPXFXGXSXXNXAXGFXPP 1233
            P       +  +    F PP
Sbjct: 205  PLSQAPVANTSSRPSSFAPP 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,530,565
Number of Sequences: 5004
Number of extensions: 79482
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 866210038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)