Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C05_e611_05.seq
         (1542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   7.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   7.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   9.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   9.3  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 179 KVLQPKQVNTMHNFNQLSFILNSSYENIN-RRDWF*HIIN 295
           K++     NT+HN N      N++Y N N  +  + +IIN
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 179 KVLQPKQVNTMHNFNQLSFILNSSYENIN-RRDWF*HIIN 295
           K++     NT+HN N      N++Y N N  +  + +IIN
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1521 PLPPPPP 1541
            PLPPPPP
Sbjct: 374  PLPPPPP 380


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 140 RVNNQGVATLHSIKVLQPKQVNTMHNFNQLSF-ILNSSYENI 262
           R+N Q    + ++ +   K +N  +NFN+++F IL ++  ++
Sbjct: 536 RMNRQMNEYMMALSMKLQKFINNDYNFNEVNFRILGANVNDL 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,326
Number of Sequences: 438
Number of extensions: 9143
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54070500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)