Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C03_e595_05.seq
         (1527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    26   0.64 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   2.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   3.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   3.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   6.0  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 412 LKQHKEVLFQQYVHSFQ*PLLWLLQEMKNIRIQNL 308
           L +H    FQ Y+H F   LL+L+ +M  +R + L
Sbjct: 147 LCRHTVEYFQNYIHFFYQLLLYLITDMILMRYKEL 181


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 520 GGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 657
           G Y+ P +      +GP    QIRP      QP   P  Q P + +
Sbjct: 82  GNYYHPQL---HSHHGPPIHHQIRPPILHDTQPMCNPQLQVPRTFF 124


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 568 PAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQ 669
           P Q P I+  P    QPP   +   P+  Y  M+
Sbjct: 204 PHQQPPIQQQPNQGQQPPGNTAAALPSPLYPWMR 237


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 568 PAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQ 669
           P Q P I+  P    QPP   +   P+  Y  M+
Sbjct: 206 PHQQPPIQQQPNQGQQPPGNTAAALPSPLYPWMR 239


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 678 PSSTKSSNTGCITY 719
           PSSTKS + G +TY
Sbjct: 75  PSSTKSGSPGFLTY 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,583
Number of Sequences: 336
Number of extensions: 5690
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45886400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)