Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_C03_e595_05.seq
(1527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 160 4e-40
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 73 1e-13
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 72 2e-13
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 62 1e-10
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 4e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 1e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 54 4e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 50 6e-07
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 49 1e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 49 1e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 3e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 3e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 48 3e-06
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 1e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 42 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 5e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 40 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 39 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.003
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.003
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 37 0.008
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.011
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 34 0.060
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.14
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.14
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 2.2
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 2.2
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 28 3.0
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 3.9
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 3.9
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 28 3.9
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 3.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 5.2
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 9.0
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 9.0
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 9.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 160 bits (389), Expect = 4e-40
Identities = 72/112 (64%), Positives = 96/112 (85%), Gaps = 1/112 (0%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK ER++EL++++EQ+K E++ +YQGVNL++KNL D +DDERL+ EF+ FGTITSAK+M
Sbjct: 338 KKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT 397
Query: 292 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 444
E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L
Sbjct: 398 DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 369
N+++KNLD ID++ L F+ FG I S KV +++ G +KG+GFV F S E A A+ +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 370 NGRIVGTKPLYVALAQRKEDRKA 438
NG ++ K +YV + +R++
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQS 251
Score = 68.9 bits (161), Expect = 2e-12
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK + R+ Q K E L + N+Y+KNLD I ++ F FG ITS ++
Sbjct: 236 KKVYVGHHVSRRERQSKVEAL-KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVK 294
Query: 292 EDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 444
+ + +GFGFV +++ E A KAV E+N + K LYV AQ+K +R+ L
Sbjct: 295 DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 72.9 bits (171), Expect = 1e-13
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +1
Query: 193 NLYVKNLDDTIDD--ERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 360
NLYVKNLDDT+ +L F+PFG+I S+ + G SKG+GFV F E A +A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 361 TEMNGRIVGTKPLYVALAQRKEDR 432
+NG +VG K ++V A+RK DR
Sbjct: 443 DTLNGMMVGKKRIFVCFAERKSDR 466
Score = 29.9 bits (64), Expect = 0.97
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-----RSKGF---------GFVCFS 333
+YV N+D + DE + K F+ +G + S L D ++K F GFV F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 334 SPEEATKAVTEMNGRIVGTKPLYV 405
+ E + + + G +G + L +
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTI 102
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 72.1 bits (169), Expect = 2e-13
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +1
Query: 193 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 360
NL+VKNLDD I + ++L + F+ FG I S + SKG+GFV FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 361 TEMNGRIVGTKPLYVALAQRKEDRKAHLT 447
+NG + G K L+V A+++EDRK L+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLS 508
Score = 35.5 bits (78), Expect = 0.020
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +1
Query: 160 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGT------ITSAKVMLEDGRSKG-FG 318
K++R T+ +++YV NL T L + F PFG ++ K D +S F
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFA 69
Query: 319 FVCFSSPEEATKAVTEMNG 375
F+ F + A A+ +NG
Sbjct: 70 FITFENKCSADNAIASLNG 88
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 360
G NL+V NLD +D+ L F+ G + A + D GRSKG+GFV + S E A A+
Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157
Query: 361 TEMNGRIVGTKPLYVALAQRKEDR 432
MN + + KP+ V+ A ++E +
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGK 181
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 57.6 bits (133), Expect = 4e-09
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 372
L+V NL + ++DE L + F+ + ++ KV+ + +G+++GFGFV F ++ KA E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 373 GRIVGTKPLYVALA 414
G+ +G++P+ ++ A
Sbjct: 92 GKYIGSRPVKLSRA 105
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 56.0 bits (129), Expect = 1e-08
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Frame = +1
Query: 100 DEPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSA 279
DE +KAE E +R + K + + + ++V L +DD+ L +EF +GTI A
Sbjct: 235 DEKKRKAEPASE-ERPAKITKPSQDSN-ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGA 292
Query: 280 KVML--EDGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 384
+V++ + GRSKG+G+V F +PE A AV E++GR+V
Sbjct: 293 RVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
++V NL ++ L F G I S ++ + GR KGFG+V FS + A K V EM
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EM 426
Query: 370 NGRIVGTKP 396
NG + +P
Sbjct: 427 NGHFIAGRP 435
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 54.4 bits (125), Expect = 4e-08
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 360
G +L+V + + ++ L++ F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
Query: 361 TEMNGRIVGTKPLYVALAQR 420
+N + + L V A+R
Sbjct: 160 DNLNSQEFYGRVLNVQKAKR 179
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.4 bits (115), Expect = 6e-07
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 372
+YV NL D L F G++ A++ E GRSKGFG V F + +A ++ ++N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 373 GRIVGTKPLYVALA 414
G G +PL ++ A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 31.1 bits (67), Expect = 0.42
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 238 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 414
L+ F G++ A + + ++GRS+G G V SS +EA A+ ++ + L V L
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL- 257
Query: 415 QRKEDRKAH 441
DR AH
Sbjct: 258 ----DRFAH 262
Score = 30.3 bits (65), Expect = 0.73
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEM 369
+YV NL + L++ G + + +++ L +G SKG + +S+ EEA A+ T
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 370 NGRIVG 387
N + +G
Sbjct: 128 NQKFMG 133
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/82 (28%), Positives = 48/82 (58%)
Frame = +1
Query: 181 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 360
Y+G LYV N+D ++++ + F +G + S ++ + KGFG+V ++ ++A A+
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813
Query: 361 TEMNGRIVGTKPLYVALAQRKE 426
+ G+ +G + L V L++ +E
Sbjct: 814 SAA-GKQLGNRVLNVVLSKPRE 834
Score = 32.3 bits (70), Expect = 0.18
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +1
Query: 139 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 318
K+ FEQ+KS+ +L V N+D T+++ RLR F +G + +V+L +G
Sbjct: 865 KKSFEQIKSK--------SLGVTNVDGTVNEARLRSLFESYGKL--YRVVLHP-EHEG-A 912
Query: 319 FVCFSSPEEATKAVTEMNGRIVGTKPLYV 405
V F +A KA + G +G + L++
Sbjct: 913 VVEFLDIHDAGKASLALEGHEIGGRLLHI 941
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 49.2 bits (112), Expect = 1e-06
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +1
Query: 157 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLEDGR--SKGFGFVC 327
L+ + +++ +++V +L +++ + FA + + SAK+M + S+G+GFV
Sbjct: 175 LREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVR 234
Query: 328 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 444
F+ + A+ EM G+I G +P+ V LA K KAH+
Sbjct: 235 FTDENDQKSALAEMQGQICGDRPIRVGLATPKS--KAHV 271
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.4 bits (110), Expect = 3e-06
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Frame = +1
Query: 103 EPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAK 282
E K Q++L + E L++++ + ++YV N+D ++ E L+ FA G++
Sbjct: 27 EAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVT 85
Query: 283 VMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 405
++ + G KGF ++ FS P A+ +NG ++ +PL V
Sbjct: 86 ILCDKFTGHPKGFAYIEFSEPSLVPNALL-LNGSMLHERPLKV 127
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 372
L V N+ + DE ++ F PFG I + +D RSKGFG++ + +P A A+ +MN
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401
Query: 373 GRIVGTKPLYVALAQRK 423
G + + + V L K
Sbjct: 402 GFDLAGRNMRVCLGNDK 418
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 48.0 bits (109), Expect = 3e-06
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +1
Query: 202 VKNLDDTIDDERLR---KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 372
+K + D + R R + P+ I K+ E R +GFGFV F++ E+ ++A+ EMN
Sbjct: 221 LKEMFDAYNPTRARIAVRSLPPY-IIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMN 279
Query: 373 GRIVGTKPLYVALAQRKEDRK 435
G+ VG L V A +ED++
Sbjct: 280 GKQVGDLTLVVKSAVFREDKQ 300
Score = 30.7 bits (66), Expect = 0.56
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS------KGFGFVCFSSPEEATKA 357
++V L + +R F GT+ + R G FV F++ E+ KA
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 358 VTEMNGRIVGTKPLYVALAQRKEDR 432
+ +NG+ + + + V A+ +++
Sbjct: 106 IETLNGKTLDDREIVVQKARPVQEQ 130
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
++V L + ++ L+ F PFG I + K+ KG GFV +S A KA+ M G
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQG 354
Query: 376 RIVGTKPLYVA 408
+VGT + +A
Sbjct: 355 ALVGTSHIRLA 365
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 363
+++V +L T +D L F + + TSAK++++ G S+ +GFV FSS +E A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 364 EMNGRIVGTKPLYVALAQRK 423
M G + +PL +++A K
Sbjct: 243 HMQGYLCQGRPLRISVASPK 262
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 369
+Y+ NL + ++++ + PFG + S +++ + DG SKGF F F +P +A A++ +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 370 NGR 378
+G+
Sbjct: 372 DGK 374
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.5 bits (93), Expect = 3e-04
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +1
Query: 151 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-----GR--SK 309
E++ +E + +YVKNL+ + E +K F P SA + + G+ S
Sbjct: 606 EKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSM 665
Query: 310 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 444
GFGFV F A A+ MNG ++ L + L+ + D A +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 36.3 bits (80), Expect = 0.011
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
L+++NL + ++ L+ F PFG + + ++ KGF ++ F ++A +A E+
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 370 NGRIVGTKPLYVALAQRK 423
+ + + L+V A+ +
Sbjct: 385 DAKPFQGRLLHVLPAKAR 402
Score = 30.3 bits (65), Expect = 0.73
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPF----GTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 360
+ +KN+ D E+L IT V ++G S+ F F+ F + E+A KA+
Sbjct: 4 IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63
Query: 361 TEMNGRIVGTKPLYV--ALAQRKEDRK 435
+N V T + V AL R + K
Sbjct: 64 RYLNKSYVETSRIEVHRALDYRSANEK 90
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE- 366
+++ L+ D+ LR F FG + VM + GRS+GFGF+ F +P+ + +++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 367 --MNGRIVGTK 393
++G+I+ K
Sbjct: 225 HHLDGKIIDPK 235
Score = 36.7 bits (81), Expect = 0.008
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 369
++V + +E R F FG + A +M++ GR +GFGFV + + E A +A
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQ 307
Query: 370 NGRIVGTKPLYVALAQRKED-RKAH 441
+ KP+ V A K R +H
Sbjct: 308 PYITIHGKPVEVKRATPKASLRDSH 332
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 366
N+Y++ L DE L FG ++S+K ++ E KG+GF CF + A ++
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISA 356
Query: 367 M 369
M
Sbjct: 357 M 357
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 363
+ NLY+ NL ++ + F P I++ + +S+G GF + A +
Sbjct: 382 ESTNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIIN 441
Query: 364 EMNGRIV--GTKPLYVALAQRKEDRK 435
+ N ++ PL + A + +K
Sbjct: 442 KFNNFVLDPALPPLQIRFADSTDQKK 467
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 369
+YV N+ + +E++ F G + S ++++ E G+ KG+GF + P A AV +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 370 NGRIVGTKPLYV 405
N GT+ L V
Sbjct: 67 NNYDAGTRRLRV 78
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 360
L+V NLD D L++ F G I ++M ED G+ KGFGFV F + KA+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATK 354
+G+ + ++ +D K G + AKV E GRSKGFGF+ F S + A
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALM 554
Query: 355 AVTEMNGRIVGTKPL 399
A+ +NGR + K +
Sbjct: 555 ALRWLNGREITVKKI 569
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDD-ERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEM 369
L ++NL +I + L F+ FG + K+ + G R GF FV + A +A+ +
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 370 NGRIVGTKPLYVALAQRKE 426
NG + +P+ V A K+
Sbjct: 169 NGTEIDGRPIAVDWAVSKD 187
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 178 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 351
R L V NL D +E LR F FG I + E GR+KGF FV + + A
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAI 257
Query: 352 KAVTEMNG 375
KA ++G
Sbjct: 258 KARDRLDG 265
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 360
N+Y+ N DD++ ERL+++F FG I R K FV F+S A A+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTSLASAINAI 466
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.011
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 295 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 411
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 33.9 bits (74), Expect = 0.060
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 372
LYV D + L EF PFG + + + R S+ F FV + +A A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 373 GR 378
GR
Sbjct: 69 GR 70
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 357
+G + V + +E++ FA FG + + + L+ G KG+ + +++ E+A KA
Sbjct: 8 EGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67
Query: 358 VTEMNGRIVGTK 393
V E N ++ K
Sbjct: 68 VDEKNLSLLDEK 79
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 369
+Y+ NLD ++++ + F+ FG ++ E G+SKGF F+ + AV M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 369
+ VKN+ +++ + L F G + ++G +G F F PEEA V +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 370 NGRIVGTKPLYV 405
NG + + L V
Sbjct: 264 NGYEINGRRLRV 275
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.7 bits (61), Expect = 2.2
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 614 NHL*DQALKHLHRLTQICNHP-TVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHL 790
+ L D A + + +C+ TVL Q R+ +L+ + ++ L+ ++ HL
Sbjct: 115 SRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHL 174
Query: 791 LLLKAAVQLVINTLQICEILQL 856
L L V VI T E++QL
Sbjct: 175 LRLVEQVNAVIGTFYTGELMQL 196
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 369
+ +KN+ ++ E L K F + ++G +G F F SPEEA V +
Sbjct: 234 IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVL 293
Query: 370 NG 375
NG
Sbjct: 294 NG 295
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSA--KVMLEDGRSKGFGFVCFSSPEEATKAVTEM 369
+ V+NL + E + + F +G I + + +KG+ ++ + ++A AV +M
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 370 NGRIVGTKPLYVAL 411
N + + L+V++
Sbjct: 161 NNAELDGEELFVSI 174
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +1
Query: 121 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 228
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 550 QEVWWEQSILLHYLVGISDPFVAYAYLPCVACTVKSNGLC 431
+E+W+E L H LVG C CT+ S GLC
Sbjct: 192 KELWFE---LNHTLVGFGQTICLPRGRRCDMCTLSSKGLC 228
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 133 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLED 297
E + F+Q E ++ +NLY + DD D+E + + PF + S K ++ D
Sbjct: 186 EERAAFKQQIREEFVKHD-INLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVD 243
Query: 298 GR 303
GR
Sbjct: 244 GR 245
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 636 SNTCIGLRKYATTLPSSTKS-SNTGCITYFSRSKTNHRTT 752
S+T GL ++T+PSST+S SN+ + S SK + +T
Sbjct: 987 SSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSST 1026
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 9.0
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 635 LKHLHRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLL--LKAA 808
LK L RL++ICN +L E ++ L L + Q+N +L + Q + LL +
Sbjct: 488 LKILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRG 547
Query: 809 VQLVINTLQICEILQLRSL 865
Q + Q E L+L L
Sbjct: 548 CQKAVIVSQYKETLELIEL 566
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/71 (25%), Positives = 25/71 (35%)
Frame = +3
Query: 567 SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHR 746
S+TN N YT P T +G +PS S G S + N+
Sbjct: 61 STTNPLNLLYTQTQQPARSTTPFLLNPVGSSPGKLPVPSRNNSYLQGTAESNSGNFANNS 120
Query: 747 TTRCCWHGWIN 779
+ CW+ N
Sbjct: 121 ISNNCWNSAYN 131
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 555 TLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCIT 716
T + +++NA N+T+ +T T +N+ T LP+S+KS T T
Sbjct: 222 TCIVNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTTSKTT 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,735,942
Number of Sequences: 5004
Number of extensions: 86083
Number of successful extensions: 339
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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