Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_C03_e595_05.seq
(1527 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 175 1e-43
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 62 1e-09
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 59 8e-09
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 59 8e-09
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 2e-07
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 54 4e-07
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 7e-07
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-06
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-05
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 47 5e-05
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 6e-05
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 46 6e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 46 1e-04
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 45 2e-04
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 3e-04
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 43 7e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 42 0.001
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 42 0.001
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.003
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.004
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.005
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 40 0.007
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 39 0.009
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 39 0.009
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.012
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.016
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 38 0.021
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 38 0.028
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.049
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 36 0.065
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 36 0.086
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.086
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.086
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.11
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.20
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.35
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 33 0.60
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.60
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.60
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.80
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 33 0.80
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 32 1.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 32 1.4
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 31 1.8
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 1.8
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 2.4
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 31 3.2
SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29) 30 4.3
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8) 30 5.6
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 175 bits (425), Expect = 1e-43
Identities = 114/257 (44%), Positives = 144/257 (56%), Gaps = 10/257 (3%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
K+AER E+K + E+ + ER+ R+QGVNLY+KNLDD IDDERLR+EF+P+GTI+SAKVM
Sbjct: 186 KRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMK 245
Query: 292 ED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXX 468
+D G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L
Sbjct: 246 DDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLAAQHMHRI 305
Query: 469 XXXXXXXXXXIFQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPA 648
+ QR + QMPQ+R PRW PP + Q
Sbjct: 306 SGL--------------------RMHQGQRPFFTPQMPQVR--PRW-GMPPQQQQQQMRP 342
Query: 649 SAYANMQXXXXXXXXXXXXXXXXTSLGARPITGQQGV--AGTAGSIRAPLVTQSSRPAG- 819
+ NM + R + Q G+ G AG R P+ Q +R G
Sbjct: 343 TGVQNM-------GGQVPRARGVRQVQPRNVGPQAGMPQGGPAGMPRMPV--QQARMGGV 393
Query: 820 ------YKYTANMRNPP 852
YK++ +RNPP
Sbjct: 394 PPQRQPYKFSQTVRNPP 410
Score = 81.4 bits (192), Expect = 2e-15
Identities = 38/85 (44%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 369
N+YVKN D +DDE++++ A G I S KVM + +G+SKGFGFV F +PEEA +AV +
Sbjct: 110 NVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVL 169
Query: 370 NGRIVGTKPLYVALAQRKEDRKAHL 444
NG+ +G + L+ A+++ +R A +
Sbjct: 170 NGKEIGGRRLWAGRAKKRAERAAEV 194
Score = 36.3 bits (80), Expect = 0.065
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +2
Query: 926 QEQKQMLGXXAFPXHSRMHPNLAGKXT 1006
QEQKQMLG FP HP++AGK T
Sbjct: 440 QEQKQMLGERLFPLIQTNHPDMAGKIT 466
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 62.1 bits (144), Expect = 1e-09
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 357
G NL++ NLD +D++ L F+ FG I ++ D G SKGF F+ F+S + + A
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAA 158
Query: 358 VTEMNGRIVGTKPLYVALAQRKEDR 432
+ MNG+ + +P+ V+ A +KE +
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKESK 183
Score = 33.1 bits (72), Expect = 0.60
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 178 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 351
R Q +YV LD+ + + + + F G + + + + +G+GFV F E+A
Sbjct: 9 RNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDAD 68
Query: 352 KAVTEMNGRIVGTKPLYV 405
A+ MN V KP+ V
Sbjct: 69 YAIKVMNMIKVYGKPIRV 86
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 59.3 bits (137), Expect = 8e-09
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L + F PFGT+ SAKV + + SK FGFV + + A A+
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAI 335
Query: 361 TEMNGRIVGTKPLYVALAQRKEDRKAH 441
MNG +G K L V L + K+ + +
Sbjct: 336 QHMNGFQIGAKRLKVQLKRPKDANRPY 362
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 59.3 bits (137), Expect = 8e-09
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +1
Query: 160 KSERLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCF 330
++ERL + G LYV +L I + ++ F PFGT+ S +++ E RSKG+GFV F
Sbjct: 231 EAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQF 290
Query: 331 SSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 441
E A +A+ +MNG + +PL + + D A+
Sbjct: 291 REAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAY 327
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 54.8 bits (126), Expect = 2e-07
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 166 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 339
E T + NL + + ++ E ++K F G +TS K++ + G+S G+ FV + +P
Sbjct: 19 ENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNP 78
Query: 340 EEATKAVTEMNGRIVGTKPLYVALAQ 417
++A KAV EMNG + K L V+ A+
Sbjct: 79 DDANKAVREMNGARLQNKTLKVSFAR 104
Score = 48.8 bits (111), Expect = 1e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 124 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DG 300
+ K LK F + S T + NLY+ L + +E + F PFG I ++KV+ + G
Sbjct: 94 QNKTLKVSFARPSS---TEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSG 150
Query: 301 RSKGFGFVCFSSPEEATKAVTEMNGR 378
+G GFV F EA A+ ++N +
Sbjct: 151 EGRGTGFVRFDKRCEAQTAIDDLNNK 176
Score = 39.5 bits (88), Expect = 0.007
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 363
QG ++V L L K F+P+G IT+ ++ L+ KG+GFV S+ EEA A+
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD----KGYGFVNMSNYEEACHAIC 325
Query: 364 EMNG 375
+NG
Sbjct: 326 CLNG 329
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 53.6 bits (123), Expect = 4e-07
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 199 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 372
Y+ NL ++D++ L ++F + KV+ E GR +GFGFV F S EE KA+ E +
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCDVV-DVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 373 GRIVGTKPLYVALAQRKEDRKA 438
G+ +P+ V AQ + +R A
Sbjct: 67 GQDFDGRPMKVNQAQPRGERGA 88
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 52.8 bits (121), Expect = 7e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKA 357
+G LY+ NL+ D+ + + F FG + ++ E GRS+GFGFV S ++ A
Sbjct: 7 RGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPA 65
Query: 358 VTEMNGRIVGTKPLYVALAQRKEDRK 435
+ +MN VG + + VALA K + +
Sbjct: 66 IEKMNQSSVGGRNITVALALDKTENR 91
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 52.0 bits (119), Expect = 1e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +1
Query: 235 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 408
RL + F PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQ 336
Query: 409 LAQRKEDRKAH 441
L + K+ + +
Sbjct: 337 LKRPKDANRPY 347
Score = 38.7 bits (86), Expect = 0.012
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVC 327
G NL++ +L D L + F PFGT+ SAKV + + SK FG C
Sbjct: 228 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGECC 276
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +1
Query: 190 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 369
+++++ NL D+E L F G + +V+ ++GRS+GFG+ F+S E+ KA+ E+
Sbjct: 180 MSVFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKAL-EL 238
Query: 370 NGRIVGTKPLYVALAQRKEDR 432
NG + + + A K R
Sbjct: 239 NGEDCCGREIRINPANSKPSR 259
Score = 36.7 bits (81), Expect = 0.049
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +1
Query: 193 NLYVKNLD-DTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 363
+L V+NL DT D A F ++AKV+ E G S+GFGFV + E A K ++
Sbjct: 290 SLIVRNLSYDTTTDSL----GAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLS 345
Query: 364 EMNGRIVGTKPLYVALAQRKED 429
EM G V + + + A + +
Sbjct: 346 EMAGAEVDGRQVRLDFASPRTE 367
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +1
Query: 67 NSARGXNPCMLDEPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRK 246
N +G + P + L K Q + + NLY++NL D+ L
Sbjct: 138 NLCKGYGFVDFESPISAQKAVAALVNKGIQAQMAKQQEQDPTNLYIQNLPQNCDEAMLEN 197
Query: 247 EFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV 384
F+ +G + S +++ + D SKG GF S E+ + + + N +++
Sbjct: 198 MFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFNKKML 244
Score = 43.6 bits (98), Expect = 4e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTE 366
NLY++ L D+ L + +GTI S K +L+ + KG+GFV F SP A KAV
Sbjct: 101 NLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAA 160
Query: 367 M 369
+
Sbjct: 161 L 161
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
L V + + D+ R F ++ + K++ G S GFGFV +++ E+A KA+ ++
Sbjct: 49 LIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKL 108
Query: 370 NGRIVGTKPLYVALAQ 417
NG +G K L VA ++
Sbjct: 109 NGFTIGNKVLKVAFSR 124
Score = 45.2 bits (102), Expect = 1e-04
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 357
+G NLYV N+ + + RK F +G I + +++ + G KG GFV + EA A
Sbjct: 131 KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAA 190
Query: 358 VTEMNG 375
++ ++G
Sbjct: 191 ISSLSG 196
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 139 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KG 312
++K + + G LYV N+ + E + F G + +M + R KG
Sbjct: 258 QQKMTHMNGNKSQAPPGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKG 317
Query: 313 FGFVCFSSPEEATKAVTEMNGRIVGTKPL 399
F FV ++ EEA A+ +NG + KPL
Sbjct: 318 FCFVTMATQEEAQNAIQTLNGFMYTNKPL 346
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 46.4 bits (105), Expect = 6e-05
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Frame = +1
Query: 100 DEPXKKAERQKELKRKFEQL-KSERLTRYQ--GVNLYVKNLDDTIDDERLRKEFAPFGTI 270
DE KK + +K ++ Q+ + L ++ ++ +L + DE L + FA + +
Sbjct: 184 DEKEKKKKEKKIVRVAGGQVWEDASLAQWDPNDFRIFCGDLGSEVTDESLTRAFAKYTSF 243
Query: 271 TSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 372
AK++ + +SKG+GFV F P + KA+ EMN
Sbjct: 244 LKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMN 279
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 45.6 bits (103), Expect = 1e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 199 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMN 372
YV L + +D++ L F PFG IT ++ ++ SK GFGFV F E+ A+ MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 373 GRIVGTKPLYVALAQ 417
+ + + V LA+
Sbjct: 68 ESELFGRTIRVNLAK 82
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 44.8 bits (101), Expect = 2e-04
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +1
Query: 142 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGF 321
R F L S+ + +++ L+ +E L+ F+ +GTI +M DGRS+GFGF
Sbjct: 34 RPFALLPSKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGF 93
Query: 322 VCFSSPEEATKAV 360
V + S + + +
Sbjct: 94 VTYESSDSVNEVL 106
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.0 bits (99), Expect = 3e-04
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
+YV +++ + +E +R F PFG I + + + + KGF FV + PE A A+ +M
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQM 163
Query: 370 NGRIVGTKPLYV 405
NG ++G + + V
Sbjct: 164 NGVLLGGRNIKV 175
Score = 35.1 bits (77), Expect = 0.15
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +1
Query: 52 PRAAGNSARGXNPCMLDEPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 231
P AA + N +L K R + + ++ + +Y+ ++ + +
Sbjct: 153 PEAAQLALEQMNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLE 212
Query: 232 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 372
+ ++ F FG + + E G+ KG+GF+ + + + A A+ MN
Sbjct: 213 DDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
Score = 31.1 bits (67), Expect = 2.4
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = +1
Query: 202 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG-----FVCFSSPEEATKAVT 363
V++LD+ ++ E + E + FGT++ + E G + FV F+SP+E KA +
Sbjct: 506 VEDLDEDLEHE-VTDECSKFGTVSRVVIYKEKQGEEEDAEVIVKIFVEFTSPDETDKATS 564
Query: 364 EMNGRIVG 387
++GR G
Sbjct: 565 NLDGRWFG 572
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 43.6 bits (98), Expect = 4e-04
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKE----FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 363
+Y+KNL++ I E L+K F+ FG I V L+ + +G FV F AT A+
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDI-VALKTLKMRGQAFVVFKDIGSATNALR 67
Query: 364 EMNGRIVGTKPLYVALAQRKEDRKA 438
M G KP+ + A+ K D A
Sbjct: 68 SMQGFPFYDKPMRIQYAKGKSDAVA 92
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 42.7 bits (96), Expect = 7e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 292 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 429
E GR +GFGFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 132 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 42.3 bits (95), Expect = 0.001
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 268 ITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 432
+ S KV+ E GR +GFGFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 42.3 bits (95), Expect = 0.001
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED----GRSKGFGFVCFSSPEEATKAVT 363
L ++NL + L++ F+ FG ++ A V + R GFGFV F++ +A KA+
Sbjct: 249 LIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALE 308
Query: 364 EMNGRIVGTKPLYVALAQRK 423
EMN + + +P+ V A K
Sbjct: 309 EMNAKKILGRPVAVDWAVPK 328
Score = 37.5 bits (83), Expect = 0.028
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE---DGRSKGFGFVCFSSPEEATKAVTE 366
++V+NL I D + F G + ++ + R +GFG+V F+ E+A KA +
Sbjct: 22 IFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKA--K 79
Query: 367 MNGRIVGTKPLYVALAQRKEDRK 435
N + + +P+++ +++K K
Sbjct: 80 DNIKSIKGRPIHLDFSEKKARTK 102
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSK 309
E++ ++L S + Q +Y+++ I L F P+G I ++ + G+SK
Sbjct: 45 EIQHSIQELLSHKEEHDQRT-IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSK 103
Query: 310 GFGFVCFSSPEEATKAV 360
GFG+V + + E A +A+
Sbjct: 104 GFGYVTYENAESAQRAL 120
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +1
Query: 292 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 408
++ RS+GFGFV F++PE+A AV +NG+ V + L +A
Sbjct: 94 QEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 40.7 bits (91), Expect = 0.003
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Frame = +1
Query: 106 PXKKAERQKELKRKFEQLKSE---RLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGT 267
P K A+ + K + + E ++T+ +GV+ L V L + +++ F FG
Sbjct: 81 PSKAADSASKRKIEESPIGKEPETKITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGE 140
Query: 268 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 429
I +V L+ RS+GFGFV F E+A K V + RI G + V L + KE+
Sbjct: 141 IDFCEVKLDPNTRRSRGFGFVRFKKDEDA-KNVLSTSHRIQG-RLCEVRLPRPKEE 194
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.004
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 366
+++V N+ +E+L++ F+ G + S +++ E G+ KG+GF + E A A+
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 367 MNGRIVGTKPLYVALAQRKEDRK 435
+NG + + L V A +++++
Sbjct: 86 LNGYELNGRALRVDSAASEKNKE 108
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.005
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 301 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 429
+SKGFGFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
Score = 29.1 bits (62), Expect = 9.8
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 157 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG-FGFVCFS 333
L++ + +LYV NLD E + F + K M+ KG + FV F
Sbjct: 358 LRARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCK-MINSPTDKGPYCFVEFE 416
Query: 334 SPEEATKAVTEMNGRIVGTKPLYV 405
+ +A +A M+ R V K L V
Sbjct: 417 THADAQEAKFRMDQRTVMDKKLKV 440
Score = 29.1 bits (62), Expect = 9.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITS 276
+++V +L + +D+ LRK F PFG I++
Sbjct: 459 HIFVGDLAENVDNALLRKTFEPFGEISA 486
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 39.5 bits (88), Expect = 0.007
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 91 CMLDEPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 270
C + K++ +K LKR + L+ + ++ N N ++ ++ G
Sbjct: 209 CAFVDFSSKSDLEKALKRNKDYLQGRYIELFKDTNRDFDNNKQGDGEKSWMRKLQEKGDD 268
Query: 271 TSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 429
+ + E ++ G GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 269 EEEEPIGEHTNKTIGIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 285
+GV L+VKNL +E L+++FA G + SA +
Sbjct: 532 EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATI 565
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 39.1 bits (87), Expect = 0.009
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 366
++++ NL I++E LR+ F G + S +++ + G KGFG+V F S + A+
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKM 116
Query: 367 MNGRIVGTK 393
N G K
Sbjct: 117 NNAEFKGRK 125
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 39.1 bits (87), Expect = 0.009
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK-----------------GFGFV 324
L+V N+ D LR+ F FG I +++ + SK GFGFV
Sbjct: 70 LHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFV 129
Query: 325 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 423
F++ EA KA ++NG IV + + V+L +
Sbjct: 130 TFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 38.7 bits (86), Expect = 0.012
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +1
Query: 163 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPE 342
+++L G ++V + T +E L++EF G + +V E RS+GF V F + E
Sbjct: 101 AKKLIASGGKTVFVSGIGLT--EEILKEEFNHLGHVE--RVNFEKNRSQGF--VTFDTWE 154
Query: 343 EATKAVTEMNGRIVGTKPLYVALAQRK 423
A KA+ EMNG V + V++A+R+
Sbjct: 155 AADKAIDEMNGLKVQHVHIRVSMARRQ 181
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 38.3 bits (85), Expect = 0.016
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKE-FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 366
L+V L + L KE F+ G +T A+V + +G S+GF FV +++ EEA K
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 367 MNGRIVGTKPLYVA 408
NGR V + VA
Sbjct: 267 HNGRQVEGSNIRVA 280
Score = 32.3 bits (70), Expect = 1.1
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 369
L+V NL + + +P+G I ++ + G SKG+GFV +++ E A +A ++
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
Query: 370 ---NGRIVGTKPLYVALAQ 417
+ +G + L VA A+
Sbjct: 175 LNTASKYIGGRILRVAFAE 193
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 37.9 bits (84), Expect = 0.021
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +1
Query: 91 CMLDEPXKKAERQKELKRKFEQLKSERLT-RYQGVNLYVKNLDDTIDDERLRKEFAPFGT 267
C D K + +L+ +QLK + + +++ + V NL + + L++ F P G
Sbjct: 147 CKGDHWTTKCPYKDQLEVIHQQLKEDDGSGQHETATIRVTNLSEETRESDLQELFRPLGP 206
Query: 268 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 375
I+ + + +SKGF F+ F E+A +A+ ++G
Sbjct: 207 ISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 37.5 bits (83), Expect = 0.028
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = +1
Query: 106 PXKKAERQKELKRKFEQLKSERLTRY----QGVNLYVKNLDDTIDDERLRKEFAPFGTIT 273
P +K +R + +S R + + LYV +L ++ + +++ F+ +G +
Sbjct: 1125 PARKGKRSSSSSSSRSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVK 1184
Query: 274 SAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 375
+ + + + S+GF +V + PEE KA+ M+G
Sbjct: 1185 TVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDG 1220
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.7 bits (81), Expect = 0.049
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
+Y+ N+ D + +EF FG + V GF F F +A AV E++G
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNP---PGFAFCVFEDRRDAEDAVRELDG 60
Query: 376 RIVGTKPLYVALAQ 417
R + + V LA+
Sbjct: 61 RYICGQRARVELAK 74
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 36.3 bits (80), Expect = 0.065
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 372
++YV+N+ + + +L+ F +G I + + + +GFV F+ E A +A+ +N
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVR------KIRDYGFVYFAKRESAVQAIDGIN 56
Query: 373 GRIVGTKPLYVALAQRKEDR 432
G + L V+LA + R
Sbjct: 57 GAYIDGCKLEVSLAIPQSSR 76
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.9 bits (79), Expect = 0.086
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
L+V + D+ LRK FA FG I A V+ + +SKG+GFV ++ + A A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71
Query: 370 NGRIVG 387
I G
Sbjct: 72 RPMIEG 77
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 35.9 bits (79), Expect = 0.086
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +1
Query: 172 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEAT 351
L R + +Y+ +L D + EF +G + V GF F F +A
Sbjct: 26 LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNP---PGFAFCIFDDRRDAE 82
Query: 352 KAVTEMNGRIVGTKPLYVALAQ 417
AV E++GR + + + V LA+
Sbjct: 83 DAVRELDGRYICGQRVRVELAK 104
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 35.9 bits (79), Expect = 0.086
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 372
L+V NL+ I + LR F FG + + G+ + FV F+ + A KA M
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 373 GRIVGTKPLYVALAQRKE 426
G+ +G + + + ++
Sbjct: 299 GQCIGRNHIKIGYGRSQQ 316
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 35.5 bits (78), Expect = 0.11
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
++V NLD I E L F+ G I ++ +DG+ + ++ F+ + A+ + +G
Sbjct: 74 VFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQAIVSAL-QYSG 132
Query: 376 RIVGTKPLYVALAQRK 423
I G KP+ ++R+
Sbjct: 133 AIFGGKPIKSRSSRRR 148
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 535 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 657
P+ PP Q FY P Q P PTP ++ PP +PS A +Y
Sbjct: 170 PSYPPTQPFYPPTQ-PFYPPTP--SSYPPTQPSYPPTAPSY 207
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.9 bits (74), Expect = 0.35
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 286 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 399
++++GR KG FV S E+A +A+ E++G ++ KP+
Sbjct: 285 LMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 33.1 bits (72), Expect = 0.60
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 199 YVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
Y+ NL ++D++ L ++F + + E GR +GFGFV + + K + +
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCNVVDVRVITDRETGRPRGFGFVTLEAKKTRIKPLKNLTD 144
Query: 376 R 378
R
Sbjct: 145 R 145
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.60
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 372
L+V NL + + + F+ G + +++ G+ KG+G+V + A+ AV ++
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 373 GRIVGTKPLYVALA 414
V + + VAL+
Sbjct: 233 KTEVKGRTISVALS 246
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 33.1 bits (72), Expect = 0.60
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 357
+G L+V N+ + ++ + + F+ +G I + V L+ G KG+ V + + +EA A
Sbjct: 291 EGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSA 350
Query: 358 VTEMNG 375
+ +NG
Sbjct: 351 LEALNG 356
>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 32.7 bits (71), Expect = 0.80
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 549 CTTLLWSSTNAANTTYTPMDCPTT-CKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS 725
C T+ +T NTT C TT C T H NT G T +T NT
Sbjct: 227 CNTIQ-CNTLQGNTT----QCNTTQCNTTHCNTTQGNTAQCNTTECNTAQCNTTQCNTAQ 281
Query: 726 RSKTNHRTTRCC 761
+ T TT+CC
Sbjct: 282 CNTTQCNTTQCC 293
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 32.7 bits (71), Expect = 0.80
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +1
Query: 232 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEA----TKAVTEMNGR--IVG 387
E LR+ F FG + VM + RS+GFGF+ F P+ E++G+ +
Sbjct: 122 EGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMVTT 181
Query: 388 TKPLYV 405
TK +++
Sbjct: 182 TKKIFI 187
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.3 bits (70), Expect = 1.1
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
+YV NL + ++ L F +G I + G F FV F P +A AV +G
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDG 322
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.9 bits (69), Expect = 1.4
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 217 DTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 378
D +DE L F G I ++M++ G +KGF F FS+ +EA AV +++ +
Sbjct: 162 DCFEDE-LIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNK 216
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 223 IDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEATKAVTEMNGR 378
+++E L + F +G + S K+M E R++ GFV + ++ KA+ + G+
Sbjct: 217 MNEEMLMRLFGKYGPLASVKIMWPRTEEEKSRNRNCGFVAYMRRKDGDKAIKHLTGK 273
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 31.9 bits (69), Expect = 1.4
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +3
Query: 546 SCTTLLWSSTNAANTT-YTPMDCPTTCKTKHSNTC--IGLRKYATTLPSSTKSSNTGCIT 716
+CTT S+T+ TT YTP TC T +++T Y T + +S T +
Sbjct: 105 TCTTSYTSTTSYTPTTSYTP-TTSYTCTTSYTSTTSYTPTTSYTPTTSYTLTTSYTCTTS 163
Query: 717 YFSRSKTNHRTTRCCWHGWINPCTSCYS 800
Y + H T+ C + CT+ Y+
Sbjct: 164 YTCTTSYTHTTSYTCTTSY--TCTTSYT 189
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
+Y+ L ++ ++K F +G +++L+DG +GFV F ++A AV E NG
Sbjct: 5 VYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDG----YGFVEFDYSDDAEDAVYECNG 60
Query: 376 R 378
+
Sbjct: 61 K 61
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 552 TTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNT 704
TT++ T NT+ TP+ P+T T+ + + + AT PS T S++T
Sbjct: 177 TTVVTQVTTMPNTSVTPLTSPSTSVTQRTRPTTPVTQEAT--PSQTSSAST 225
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 372
+++ L + + + L + F FG + ++ E G+S+ GFV F S + A A MN
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 373 G 375
G
Sbjct: 586 G 586
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 31.1 bits (67), Expect = 2.4
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +1
Query: 106 PXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL-DDTIDDERLRKEFAPFGTITSAK 282
P + R K L+ ++E K++ +++ NL D I + L + F+ G +
Sbjct: 21 PDRDRNRAK-LESRYETNKND--PHSVRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCS 77
Query: 283 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 429
+ FGFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 78 L------HANFGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 31.1 bits (67), Expect = 2.4
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Frame = +3
Query: 450 TVHAT----HGKYAYATNGSDIPTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPT 617
T+HAT H Y + T T R +C+ +T T+ TY + P
Sbjct: 173 TLHATYITLHAPYVHTTRHVHHTT----RTVCAQYTPRTSHYTHRMCTLRATYITIHAPY 228
Query: 618 TCKTKHSNTCIGLR-KYATTLPSSTKSSNTGCITYFSRSKTNHRTTR 755
T+H++ L YA T ++ T C Y R T+H T R
Sbjct: 229 AHSTRHTHRMCALHAPYAHTTRHVQHTTRTVCAHYTPR--TSHYTHR 273
Score = 30.3 bits (65), Expect = 4.3
Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 2/114 (1%)
Frame = +3
Query: 459 ATHGKYAYATNGSDIPTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCP--TTCKTK 632
A H YA+ T T R +C+H+T T+ + TY + P T +
Sbjct: 240 ALHAPYAHTTRHVQHTT----RTVCAHYTPRTSHYTHRMRTLHATYITLHAPYAHTTRQV 295
Query: 633 HSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHGWINPCTSC 794
H T YA T TY + TTR H C C
Sbjct: 296 HHTTRTVCAHYAPRTSHYTLRMRAVHATYITLHAPYVHTTRHVHHTTRTVCAHC 349
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 301 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 426
R +GFGFV F S A KA + ++ K + V AQ KE
Sbjct: 10 RHRGFGFVTFESENSADKA-CDTQYHLINNKKVEVKKAQPKE 50
>SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)
Length = 214
Score = 30.3 bits (65), Expect = 4.3
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 531 CSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCI 650
CS H +C + S T A N YT C T SN CI
Sbjct: 95 CSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCI 134
>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 525 ILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPS 683
IL + T T++W T ++NTT+ + T T+ + + Y+ +P+
Sbjct: 242 ILMADITPGNTMIWKITTSSNTTWNDVSFAVTMDTQEVIVTVNGKSYSARVPT 294
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 30.3 bits (65), Expect = 4.3
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 531 CSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCI 650
CS H +C + S T A N YT C T SN CI
Sbjct: 674 CSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCI 713
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +3
Query: 474 YAYATNGSDIPTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTC 647
Y Y +I T C C H +CT L+ YT +C T N C
Sbjct: 2080 YGYEGRNCEINTDDCAANPCLHGATCTDLVGGFVCTCALGYTDHNCSTIIDNCDPNPC 2137
>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
Length = 245
Score = 29.9 bits (64), Expect = 5.6
Identities = 29/109 (26%), Positives = 43/109 (39%)
Frame = +3
Query: 375 TYCWNKTSLCCFSSTQGRPQSPFDFTVHATHGKYAYATNGSDIPTK*CRRILCSHHTSCT 554
T C+ T+ C +S+ P T T+ K + T+GS C I C+ +SC
Sbjct: 113 TICFGPTNRCTTTSSTTISVGP---TNSCTNVKDSTNTSGSSTTIDVCPIITCTTTSSCC 169
Query: 555 TLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSN 701
T S TT PTT + + + + TT S T S +
Sbjct: 170 TTFNGSPTIIGTT---SGSPTTSNSPNISNGPTISSSPTTSGSPTISDS 215
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 29.5 bits (63), Expect = 7.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 516 CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTK- 692
C+ L SH+T C + ++ +A ++ +T ++C TKHS TT P +
Sbjct: 112 CKEQL-SHNTPCKSSCQTTHHARSSCHTTHSARSSCHTKHSTR----SSCHTTQPCKKQL 166
Query: 693 SSNTGCITYFSRS 731
S NT C S +
Sbjct: 167 SHNTPCTEKLSHN 179
>SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.1 bits (62), Expect = 9.8
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 626 DQALKHL----HRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNK-VLLARLDQS 781
D L HL H I N+ + HQ + VLL QD + D++ VLL R D +
Sbjct: 191 DSVLNHLNVSKHHQGDILNYQIMFHQGESRKRQTVLLHRQDNNHDHQTVLLHRQDNN 247
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 29.1 bits (62), Expect = 9.8
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Frame = +3
Query: 534 SHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNT--------CIGLRKYATTLPSST 689
S +TS T ++ST+ T + C TC SNT C Y +T +
Sbjct: 181 STYTSANTRTYTSTSTRANTISST-CANTCANTRSNTSANTRANTCSNTSTYTSTNTRAN 239
Query: 690 KSSNTGCITYFSRSKTNHRT 749
SSNT C S + T+ T
Sbjct: 240 TSSNT-CADTRSNTSTSSYT 258
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 369
+++ L + ++++++++ + FG + + ++ + G SKG+ F + A+ +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 370 NGRIVGTKPLYVALA 414
NG +G K L V A
Sbjct: 735 NGMQLGDKKLIVQRA 749
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 29.1 bits (62), Expect = 9.8
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = +3
Query: 591 TYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 770
T+ CP +C+ K +N+C + + +L S +S+ G ++++ R W G
Sbjct: 1011 TFARKFCPESCRAKCTNSCPPICCDSRSLISLLQSAAGGSEVDVTKTEDLFRNA-MSWFG 1069
Query: 771 WINPCTSCYSKQPSS 815
+N Y+ P++
Sbjct: 1070 MMNFLNMMYNMNPAA 1084
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 214 DDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNG 375
D+ +D+ L++ +A +++ G ++GFGFV F +PE A + + + G
Sbjct: 340 DEISEDDVLQELYAAEVAFRDVRIVRNKIGYTRGFGFVEFDTPEAAKEWMDYLKG 394
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,432,743
Number of Sequences: 59808
Number of extensions: 715009
Number of successful extensions: 3999
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 3541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3956
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4965079671
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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