Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_C03_e595_05.seq
(1527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 175 5e-44
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 175 5e-44
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 175 5e-44
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 174 2e-43
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 171 1e-42
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 171 1e-42
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 64 2e-10
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 64 2e-10
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 64 2e-10
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 64 2e-10
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 61 2e-09
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 61 2e-09
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 61 2e-09
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 61 2e-09
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 61 2e-09
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 59 7e-09
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 59 7e-09
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 59 9e-09
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 57 4e-08
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 57 4e-08
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 56 5e-08
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 56 7e-08
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 50 3e-06
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 50 4e-06
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 50 6e-06
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 49 8e-06
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 49 8e-06
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 49 8e-06
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 49 1e-05
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 49 1e-05
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 48 2e-05
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 48 2e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 47 3e-05
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 46 5e-05
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 46 9e-05
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 45 1e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 45 2e-04
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 44 3e-04
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 43 5e-04
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 42 0.001
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 42 0.001
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 42 0.002
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 41 0.003
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 41 0.003
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 41 0.003
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 41 0.003
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 40 0.004
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 40 0.004
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 40 0.006
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 40 0.006
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 40 0.006
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 40 0.006
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 40 0.006
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 40 0.006
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 39 0.011
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 39 0.011
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 39 0.011
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 39 0.011
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 39 0.011
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 39 0.011
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 39 0.011
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.019
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 38 0.019
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 38 0.019
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 37 0.033
U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna b... 36 0.076
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 36 0.076
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.10
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 35 0.13
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 35 0.13
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 35 0.13
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 35 0.13
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 35 0.13
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 34 0.23
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 34 0.31
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.40
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 33 0.53
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 33 0.53
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 33 0.53
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 33 0.53
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.71
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.71
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.71
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.71
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 33 0.71
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.71
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 32 1.2
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 31 2.8
Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical pr... 31 2.8
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 31 2.8
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 31 2.8
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 31 2.8
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 30 3.8
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 30 3.8
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 30 3.8
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 30 5.0
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 30 5.0
Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical pr... 29 6.6
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 6.6
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 29 6.6
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 8.7
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 29 8.7
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 29 8.7
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 29 8.7
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 29 8.7
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 29 8.7
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 175 bits (427), Expect = 5e-44
Identities = 94/174 (54%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G ITSAKVM
Sbjct: 231 KKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMT 290
Query: 292 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXX 468
E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+AQRKEDR+A L
Sbjct: 291 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 350
Query: 469 XXXXXXX---XXXIFQPSSAG-GYFVPTIPPAQR-FYGPAQMPQIRPTPRWTAQ 615
++ P+ G GY+V QR F G QM +RP RW Q
Sbjct: 351 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQ 402
Score = 82.6 bits (195), Expect = 7e-16
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T Q N+YVKN D + E L K FA FG ITS +VM +G+SKGFGFV F++PEEA
Sbjct: 148 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 207
Query: 355 AVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 444
AV + + I GT L+V AQ+K +R A L
Sbjct: 208 AVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 239
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 175 bits (427), Expect = 5e-44
Identities = 94/174 (54%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G ITSAKVM
Sbjct: 228 KKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMT 287
Query: 292 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXX 468
E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+AQRKEDR+A L
Sbjct: 288 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 347
Query: 469 XXXXXXX---XXXIFQPSSAG-GYFVPTIPPAQR-FYGPAQMPQIRPTPRWTAQ 615
++ P+ G GY+V QR F G QM +RP RW Q
Sbjct: 348 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQ 399
Score = 82.6 bits (195), Expect = 7e-16
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T Q N+YVKN D + E L K FA FG ITS +VM +G+SKGFGFV F++PEEA
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 204
Query: 355 AVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 444
AV + + I GT L+V AQ+K +R A L
Sbjct: 205 AVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 236
Score = 70.5 bits (165), Expect = 3e-12
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Frame = +1
Query: 43 VXXPRAAGNSARGXNPC----MLDEPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 210
V P AA A P +D +A K ++ + Q + + R N+++KN
Sbjct: 5 VAAPAAAVAGAAAPQPADAERAMDTMNFEALHGKPMRIMWSQ-RDPAMRRSGAGNIFIKN 63
Query: 211 LDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 387
LD ID++ + F+ FG I S KV + EDG SKG+GFV F + E A A+ ++NG ++
Sbjct: 64 LDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLA 123
Query: 388 TKPLYVALAQRKEDRKAHL 444
K ++V Q + R L
Sbjct: 124 GKKVFVGKFQPRAQRNREL 142
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 175 bits (427), Expect = 5e-44
Identities = 94/174 (54%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G ITSAKVM
Sbjct: 291 KKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMT 350
Query: 292 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXX 468
E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+AQRKEDR+A L
Sbjct: 351 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 410
Query: 469 XXXXXXX---XXXIFQPSSAG-GYFVPTIPPAQR-FYGPAQMPQIRPTPRWTAQ 615
++ P+ G GY+V QR F G QM +RP RW Q
Sbjct: 411 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQ 462
Score = 82.6 bits (195), Expect = 7e-16
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T Q N+YVKN D + E L K FA FG ITS +VM +G+SKGFGFV F++PEEA
Sbjct: 208 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
Query: 355 AVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 444
AV + + I GT L+V AQ+K +R A L
Sbjct: 268 AVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 299
Score = 69.7 bits (163), Expect = 5e-12
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEM 369
N+++KNLD ID++ + F+ FG I S KV + EDG SKG+GFV F + E A A+ ++
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 370 NGRIVGTKPLYVALAQRKEDRKAHL 444
NG ++ K ++V Q + R L
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNREL 205
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 174 bits (423), Expect = 2e-43
Identities = 93/174 (53%), Positives = 115/174 (66%), Gaps = 6/174 (3%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G ITSAKVM
Sbjct: 291 KKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMT 350
Query: 292 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXX 468
E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+ QRKEDR+A L
Sbjct: 351 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKEDRRAQLASQYMQRV 410
Query: 469 XXXXXXX---XXXIFQPSSAG-GYFVPTIPPAQR-FYGPAQMPQIRPTPRWTAQ 615
++ P+ G GY+V QR F G QM +RP RW Q
Sbjct: 411 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQ 462
Score = 83.0 bits (196), Expect = 5e-16
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T Q N+YVKN D + E L K FA FG ITS +VM +G+SKGFGFV F++PEEA
Sbjct: 208 TAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
Query: 355 AVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 444
AV + + I GT L+V AQ+K +R A L
Sbjct: 268 AVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 299
Score = 69.7 bits (163), Expect = 5e-12
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEM 369
N+++KNLD ID++ + F+ FG I S KV + EDG SKG+GFV F + E A A+ ++
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 370 NGRIVGTKPLYVALAQRKEDRKAHL 444
NG ++ K ++V Q + R L
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNREL 205
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 171 bits (415), Expect = 1e-42
Identities = 93/172 (54%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK+ER ELKRK+E LK ER+ RYQGVNLYVKN+++ ++D+ LR F+ FGTITSAKVM+
Sbjct: 317 KKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMV 376
Query: 292 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT------- 447
E+GRSKGFGFVCF PEEAT AVT+MN +++G KPLYVALAQRKEDR+A L
Sbjct: 377 DENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 436
Query: 448 XXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPPAQRFYG-PAQMPQIRPTP 600
++QP GYFVP AQ G Q QIR P
Sbjct: 437 ATLRMGQQASGVPAMTQLYQPGQQ-GYFVPNPMNAQGRPGFQPQSAQIRGPP 487
Score = 68.9 bits (161), Expect = 9e-12
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 369
N++VKN + +D E+L F+ FG ITSA VM + G+ KGFGFV F+ + A +AV ++
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 370 NGRIV-GTK-PLYVALAQRKEDRKAHL 444
N I+ GT L V AQ+K +R A L
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAEL 325
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 369
N+++KNLD ID++ + F+ FG I S KV +D G SKG+GFV F + A A+ ++
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 370 NGRIVGTKPLYVALAQRKEDRKAHL 444
NG ++ K +YV Q + R L
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKEL 230
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 171 bits (415), Expect = 1e-42
Identities = 93/172 (54%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
KK+ER ELKRK+E LK ER+ RYQGVNLYVKN+++ ++D+ LR F+ FGTITSAKVM+
Sbjct: 317 KKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMV 376
Query: 292 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT------- 447
E+GRSKGFGFVCF PEEAT AVT+MN +++G KPLYVALAQRKEDR+A L
Sbjct: 377 DENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 436
Query: 448 XXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPPAQRFYG-PAQMPQIRPTP 600
++QP GYFVP AQ G Q QIR P
Sbjct: 437 ATLRMGQQASGVPAMTQLYQPGQQ-GYFVPNPMNAQGRPGFQPQSAQIRGPP 487
Score = 68.9 bits (161), Expect = 9e-12
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 369
N++VKN + +D E+L F+ FG ITSA VM + G+ KGFGFV F+ + A +AV ++
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 370 NGRIV-GTK-PLYVALAQRKEDRKAHL 444
N I+ GT L V AQ+K +R A L
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAEL 325
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 369
N+++KNLD ID++ + F+ FG I S KV +D G SKG+GFV F + A A+ ++
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 370 NGRIVGTKPLYVALAQRKEDRKAHL 444
NG ++ K +YV Q + R L
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKEL 230
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 64.5 bits (150), Expect = 2e-10
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
+++V +L +D+++LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +
Sbjct: 23 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 82
Query: 367 MNGRIVGTKPLYVALAQRK 423
MNG+ +G + + A RK
Sbjct: 83 MNGQWLGRRTIRTNWATRK 101
Score = 45.6 bits (103), Expect = 9e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T ++YV N+ +DE +R+ FA FG IT ++ + +G+ FV F + + A K
Sbjct: 123 TSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAK 177
Query: 355 AVTEMNGRIVG 387
A+ +MN + VG
Sbjct: 178 AIVQMNNQDVG 188
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 64.5 bits (150), Expect = 2e-10
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
+++V +L +D+++LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +
Sbjct: 33 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 92
Query: 367 MNGRIVGTKPLYVALAQRK 423
MNG+ +G + + A RK
Sbjct: 93 MNGQWLGRRTIRTNWATRK 111
Score = 45.6 bits (103), Expect = 9e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T ++YV N+ +DE +R+ FA FG IT ++ + +G+ FV F + + A K
Sbjct: 133 TSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAK 187
Query: 355 AVTEMNGRIVG 387
A+ +MN + VG
Sbjct: 188 AIVQMNNQDVG 198
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 64.5 bits (150), Expect = 2e-10
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
+++V +L +D+++LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +
Sbjct: 136 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 195
Query: 367 MNGRIVGTKPLYVALAQRK 423
MNG+ +G + + A RK
Sbjct: 196 MNGQWLGRRTIRTNWATRK 214
Score = 45.6 bits (103), Expect = 9e-05
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
LYV NLD T+ ++ + F G++T KV+ DG + + FV FS +A++A+ MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIF-DGSNDPYAFVEFSDHGQASQALQTMNK 106
Query: 376 RIV 384
R++
Sbjct: 107 RLL 109
Score = 45.6 bits (103), Expect = 9e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T ++YV N+ +DE +R+ FA FG IT ++ + +G+ FV F + + A K
Sbjct: 236 TSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAK 290
Query: 355 AVTEMNGRIVG 387
A+ +MN + VG
Sbjct: 291 AIVQMNNQDVG 301
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-10
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
+++V +L +D+++LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +
Sbjct: 104 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 163
Query: 367 MNGRIVGTKPLYVALAQRK 423
MNG+ +G + + A RK
Sbjct: 164 MNGQWLGRRTIRTNWATRK 182
Score = 45.6 bits (103), Expect = 9e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATK 354
T ++YV N+ +DE +R+ FA FG IT ++ + +G+ FV F + + A K
Sbjct: 204 TSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAK 258
Query: 355 AVTEMNGRIVG 387
A+ +MN + VG
Sbjct: 259 AIVQMNNQDVG 269
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 297
LYV NLD T+ ++ + F G++T KV+ ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE 81
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 61.3 bits (142), Expect = 2e-09
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L FAPFG I SAKV ++ SK FGFV + + + AT A+
Sbjct: 334 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 393
Query: 361 TEMNGRIVGTKPLYVAL 411
+ MNG +G+K L V L
Sbjct: 394 SAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 61.3 bits (142), Expect = 2e-09
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L FAPFG I SAKV ++ SK FGFV + + + AT A+
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 361 TEMNGRIVGTKPLYVAL 411
+ MNG +G+K L V L
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
Score = 41.9 bits (94), Expect = 0.001
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM- 369
L++ L ++E LR+ FA FG I V+ + DG+S+G FV F++ A A EM
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Query: 370 -NGRIVG-TKPLYVALAQRKEDR 432
+ + G + PL V A ++D+
Sbjct: 204 HSQTMEGCSAPLVVKFADTQKDK 226
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 61.3 bits (142), Expect = 2e-09
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L FAPFG I SAKV ++ SK FGFV + + + AT A+
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 361 TEMNGRIVGTKPLYVAL 411
+ MNG +G+K L V L
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
Score = 41.9 bits (94), Expect = 0.001
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM- 369
L++ L ++E LR+ FA FG I V+ + DG+S+G FV F++ A A EM
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Query: 370 -NGRIVG-TKPLYVALAQRKEDR 432
+ + G + PL V A ++D+
Sbjct: 204 HSQTMEGCSAPLVVKFADTQKDK 226
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 61.3 bits (142), Expect = 2e-09
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L FAPFG I SAKV ++ SK FGFV + + + AT A+
Sbjct: 427 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 486
Query: 361 TEMNGRIVGTKPLYVAL 411
+ MNG +G+K L V L
Sbjct: 487 SAMNGFQIGSKRLKVQL 503
Score = 41.9 bits (94), Expect = 0.001
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM- 369
L++ L ++E LR+ FA FG I V+ + DG+S+G FV F++ A A EM
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Query: 370 -NGRIVG-TKPLYVALAQRKEDR 432
+ + G + PL V A ++D+
Sbjct: 204 HSQTMEGCSAPLVVKFADTQKDK 226
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 61.3 bits (142), Expect = 2e-09
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L FAPFG I SAKV ++ SK FGFV + + + AT A+
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 361 TEMNGRIVGTKPLYVAL 411
+ MNG +G+K L V L
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
Score = 41.9 bits (94), Expect = 0.001
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM- 369
L++ L ++E LR+ FA FG I V+ + DG+S+G FV F++ A A EM
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Query: 370 -NGRIVG-TKPLYVALAQRKEDR 432
+ + G + PL V A ++D+
Sbjct: 204 HSQTMEGCSAPLVVKFADTQKDK 226
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 59.3 bits (137), Expect = 7e-09
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L + FAPFG I SAKV ++ +SK FGFV + + + A+
Sbjct: 428 GCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAI 487
Query: 361 TEMNGRIVGTKPLYVALAQ-RKEDR 432
T MNG +G K L V L + R E R
Sbjct: 488 TAMNGFQIGMKRLKVQLKRPRNESR 512
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 59.3 bits (137), Expect = 7e-09
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 360
G NL++ +L D L + FAPFG I SAKV ++ +SK FGFV + + + A+
Sbjct: 428 GCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAI 487
Query: 361 TEMNGRIVGTKPLYVALAQ-RKEDR 432
T MNG +G K L V L + R E R
Sbjct: 488 TAMNGFQIGMKRLKVQLKRPRNESR 512
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 58.8 bits (136), Expect = 9e-09
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
+++V +L ID +LR+ F FG ++ AK++ ++ + KG+GFV + E+A +A+ E
Sbjct: 133 HVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDE 192
Query: 367 MNGRIVGTKPLYVALAQRKED 429
MNG +G + + A RK D
Sbjct: 193 MNGAWLGRRTIRTNWATRKPD 213
Score = 47.2 bits (107), Expect = 3e-05
Identities = 28/73 (38%), Positives = 39/73 (53%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L+V NLD I DE L F G + AK++ E G + + FV FS +AT A+ NG
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE-GLNDPYAFVEFSDHNQATLALQSHNG 100
Query: 376 RIVGTKPLYVALA 414
R + K ++V A
Sbjct: 101 RELLEKEMHVTWA 113
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 56.8 bits (131), Expect = 4e-08
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSA-KVM--LEDGRSKGFGFVCFSSPEEATKA 357
G N++V NLD +D++ L F+ FG I K+M ++ G SKGF F+ F+S E + A
Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158
Query: 358 VTEMNGRIVGTKPLYVALAQRKEDR 432
+ MNG+ + + + V+ A +++ +
Sbjct: 159 LEAMNGQFLCNRAITVSYAFKRDSK 183
Score = 35.1 bits (77), Expect = 0.13
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 178 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 351
R Q +YV LD+ + + L + G + S + + +GFGFV F E+A
Sbjct: 9 RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68
Query: 352 KAVTEMNGRIVGTKPLYVALAQRKE 426
A+ +N + KP+ V A E
Sbjct: 69 YAIKILNMIKLYGKPIKVNKASAHE 93
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 56.8 bits (131), Expect = 4e-08
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSA-KVM--LEDGRSKGFGFVCFSSPEEATKA 357
G N++V NLD +D++ L F+ FG I K+M ++ G SKGF F+ F+S E + A
Sbjct: 109 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 168
Query: 358 VTEMNGRIVGTKPLYVALAQRKEDR 432
+ MNG+ + + + V+ A +++ +
Sbjct: 169 LEAMNGQFLCNRAITVSYAFKRDSK 193
Score = 35.1 bits (77), Expect = 0.13
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 178 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 351
R Q +YV LD+ + + L + G + S + + +GFGFV F E+A
Sbjct: 19 RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 78
Query: 352 KAVTEMNGRIVGTKPLYVALAQRKE 426
A+ +N + KP+ V A E
Sbjct: 79 YAIKILNMIKLYGKPIKVNKASAHE 103
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 56.4 bits (130), Expect = 5e-08
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Frame = +1
Query: 103 EPXKKAERQKELKRKF------EQLKSERLTRYQ--GVNLYVKNLDDTIDDERLRKEFAP 258
+P KK ++++ K+KF + + L + ++ +L + + DE L K F
Sbjct: 166 DPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRK 225
Query: 259 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 426
+ + AKV+ E +SKG+GFV F E+ +A+ EM+G+ VG +P+ + + KE
Sbjct: 226 YPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKE 283
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 56.0 bits (129), Expect = 7e-08
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Frame = +1
Query: 169 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPE 342
R+ + +++V +L + +E L+ F FG ++ AKV+ ++ +SKG+GFV F + +
Sbjct: 128 RIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQ 187
Query: 343 EATKAVTEMNGRIVGTKPLYVALAQRK--EDRKAHLT 447
A A+ MNG+ +G + + A RK E+ + LT
Sbjct: 188 NAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLT 224
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/89 (30%), Positives = 47/89 (52%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
K +E ++ K FEQ+ + T+ ++YV N+ D LR F+ +G I ++
Sbjct: 214 KNSEENRD-KLTFEQVFNS--TKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIF- 269
Query: 292 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 378
+++ + FV + E ATKA+ EMNG+
Sbjct: 270 ---KTQRYAFVRYEKKECATKAIMEMNGK 295
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 50.4 bits (115), Expect = 3e-06
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEA 348
T NLY++ L +D+ LR+ + +G I S K +++ + KG+GFV F SP+ A
Sbjct: 76 TPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAA 135
Query: 349 TKAVTEMNGRIVGTKPLYVALAQRKED 429
AV +N G + L Q+++D
Sbjct: 136 AAAVDGLNTE--GVQAQMAKLQQQEQD 160
Score = 42.3 bits (95), Expect = 9e-04
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Frame = +1
Query: 61 AGNSARGXNPCMLDEPXKKAERQKELKRKFEQLKSERLTRYQG--VNLYVKNLDDTIDDE 234
A N+ +G + P A L + Q + +L + + NLY+ NL ++
Sbjct: 117 ATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFTEQ 176
Query: 235 RLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L E FG + S +++ D +S+G GF S E+ ++ +NG
Sbjct: 177 MLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNG 224
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 50.0 bits (114), Expect = 4e-06
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEA 348
T NLY++ L +D+ LR+ + +G I S K +++ + KG+GFV F SP+ A
Sbjct: 102 TTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAA 161
Query: 349 TKAVTEMNGRIVGTKPLYVALAQRKED 429
AV +N G + L Q+++D
Sbjct: 162 AAAVDGLNTE--GVQAQMAKLQQQEQD 186
Score = 42.3 bits (95), Expect = 9e-04
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Frame = +1
Query: 61 AGNSARGXNPCMLDEPXKKAERQKELKRKFEQLKSERLTRYQG--VNLYVKNLDDTIDDE 234
A N+ +G + P A L + Q + +L + + NLY+ NL ++
Sbjct: 143 ATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFTEQ 202
Query: 235 RLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L E FG + S +++ D +S+G GF S E+ ++ +NG
Sbjct: 203 MLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNG 250
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 49.6 bits (113), Expect = 6e-06
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKA 357
+G NLYV + ++ L F PFG I +++++ ++ G SKG GFV F +EA A
Sbjct: 126 KGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVA 185
Query: 358 VTEMNGRI 381
+ +NG I
Sbjct: 186 IKTLNGSI 193
Score = 46.0 bits (104), Expect = 7e-05
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 366
NL + L + E +R F G I S K++ + G+S G+GFV + E+A +AV+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 367 MNGRIVGTKPLYVALAQRKEDR 432
NG + K + V+ A+ D+
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQ 124
Score = 44.8 bits (101), Expect = 2e-04
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 363
G L+V NL DD L + F+ FG I + K++ + + KG+ FV S+ EA A+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 364 EMNGRIVGTKPLYV 405
+NG + K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 49.2 bits (112), Expect = 8e-06
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Frame = +1
Query: 115 KAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 294
+ ++Q++ ++ +Q+ S+ L+ +YV ++ I ++ LR+ F PFG I S + +
Sbjct: 79 RQQKQQQENQQRQQMYSQALSIMS--RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWD 136
Query: 295 D--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 405
G K F FV + PE A A MNG+++G + L V
Sbjct: 137 PATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 49.2 bits (112), Expect = 8e-06
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Frame = +1
Query: 115 KAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 294
+ ++Q++ ++ +Q+ S+ L+ +YV ++ I ++ LR+ F PFG I S + +
Sbjct: 79 RQQKQQQENQQRQQMYSQALSIMS--RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWD 136
Query: 295 D--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 405
G K F FV + PE A A MNG+++G + L V
Sbjct: 137 PATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 49.2 bits (112), Expect = 8e-06
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Frame = +1
Query: 115 KAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 294
+ ++Q++ ++ +Q+ S+ L+ +YV ++ I ++ LR+ F PFG I S + +
Sbjct: 79 RQQKQQQENQQRQQMYSQALSIMS--RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWD 136
Query: 295 D--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 405
G K F FV + PE A A MNG+++G + L V
Sbjct: 137 PATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 48.8 bits (111), Expect = 1e-05
Identities = 23/80 (28%), Positives = 42/80 (52%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L+V N+ D L+ F FG ++ +++ + SKGFGFV P++A +A E++G
Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHG 214
Query: 376 RIVGTKPLYVALAQRKEDRK 435
++ + + V A + K
Sbjct: 215 SMIEGRKIEVNCATARVHSK 234
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 48.8 bits (111), Expect = 1e-05
Identities = 23/80 (28%), Positives = 42/80 (52%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L+V N+ D L+ F FG ++ +++ + SKGFGFV P++A +A E++G
Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHG 214
Query: 376 RIVGTKPLYVALAQRKEDRK 435
++ + + V A + K
Sbjct: 215 SMIEGRKIEVNCATARVHSK 234
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 48.0 bits (109), Expect = 2e-05
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L+V N+ + L F G + +++ + SKGFGFV +P++A +A E NG
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNG 161
Query: 376 RIVGTKPLYVALA-QRKEDRKA 438
+ + + V LA QR ++KA
Sbjct: 162 TTIEGRRVEVNLATQRVHNKKA 183
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 48.0 bits (109), Expect = 2e-05
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L+V N+ + L F G + +++ + SKGFGFV +P++A +A E NG
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNG 161
Query: 376 RIVGTKPLYVALA-QRKEDRKA 438
+ + + V LA QR ++KA
Sbjct: 162 TTIEGRRVEVNLATQRVHNKKA 183
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 47.2 bits (107), Expect = 3e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 366
++YV N +E L F+ G I + +++ E GR +GF F+ F+ A +AV +
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 367 MNGRIVGTKPLYVALAQR 420
MNG +PL V LA +
Sbjct: 66 MNGAEFNGRPLRVNLANK 83
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 46.4 bits (105), Expect = 5e-05
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 175 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAK-VMLEDGRSKGFGFVCFSSPEEAT 351
T + ++V+N+ D+ L+ F+ FGT+TS + V +DG+ KG FV F + A
Sbjct: 678 TTLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQ 737
Query: 352 KAVTEMNGRIVGTKPLYVALA 414
K V + ++ + L VAL+
Sbjct: 738 KCVASGDKLMLRERELEVALS 758
Score = 32.3 bits (70), Expect = 0.93
Identities = 16/71 (22%), Positives = 38/71 (53%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
++V NLD T ++ +R+ +I A+ D +GF +V + ++A +A+ +
Sbjct: 595 IFVSNLDFTTTEDEIRQAIEGVASIRFARKANSDLVHRGFAYVVMENDQKAQQALLKDRV 654
Query: 376 RIVGTKPLYVA 408
+ G +P++++
Sbjct: 655 PVKG-RPMFIS 664
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 45.6 bits (103), Expect = 9e-05
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMN 372
L VKNL T +++LRK F +G I+ A + ++G+ +GF FV F A+ A+ + N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
Query: 373 GRIVGTKPLYV 405
+K L V
Sbjct: 65 QTFFNSKKLTV 75
Score = 37.1 bits (82), Expect = 0.033
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
L+++NL ++ L+ F +G ++ +V+++ G KGF V F PE A A + +
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 370 NGRIVGTKPLYVALAQRKEDRK 435
+G + + +++ K ++
Sbjct: 341 DGYVFKGRMMHILPGDEKRTKE 362
Score = 32.3 bits (70), Expect = 0.93
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 291
K + R+ K ++ + ++ + + L V+NL + + F FG + + ++
Sbjct: 722 KISHRENADKGALKRKEVKQKEQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPK 781
Query: 292 EDGRS---KGFGFVCFSSPEEATKA 357
+ G+ +GFGFV F S +EA +A
Sbjct: 782 KPGQKQQHRGFGFVDFISADEAHRA 806
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 45.2 bits (102), Expect = 1e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 369
LYV + + ++ L F PFG + + + + E G+ +GFGFV F E+A A+ M
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 370 NGRIVGTKPLYVALAQ 417
N + K + V A+
Sbjct: 73 NESELFGKTIRVNFAR 88
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 44.8 bits (101), Expect = 2e-04
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKA 357
QG ++YV N+ +E + FA G + + +++ E GR +GF FV FS A +A
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRA 63
Query: 358 VTEMNGRIVGTKPLYVALAQR 420
V ++NG + L V A +
Sbjct: 64 VEQLNGVAFNGRNLRVNYANK 84
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +3
Query: 543 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYF 722
T+ TT ++T TT TP PTT T + T +TT + T + + T
Sbjct: 257 TTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTT 316
Query: 723 SRSKTNHRTTRC---CWHGWINPCTSCYSK 803
+ KT T++C C GW+ CY+K
Sbjct: 317 TTPKTPFDTSKCTVMCSTGWVYYNNLCYAK 346
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-QRKE 426
F G + +++ + SKGFGFV +P++A +A E NG + + + V LA QR
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVH 61
Query: 427 DRKA 438
++KA
Sbjct: 62 NKKA 65
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 44.0 bits (99), Expect = 3e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 360
G ++YV N ++ L F+ G +++ +++ E GR +GF FV F+ A +AV
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 361 TEMNGRIVGTKPLYVALAQRKED 429
+ NG + L V LAQ + +
Sbjct: 63 DQFNGVDFNGRALRVNLAQNRNN 85
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 43.2 bits (97), Expect = 5e-04
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Frame = +1
Query: 100 DEPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSA 279
+EP KK + K QLK++ +G ++++NL +E +++E + FG I A
Sbjct: 240 EEPAKKPKNPKA------QLKTDESIT-EGKVVFLRNLSYDTKEELIKEELSKFGKIDLA 292
Query: 280 KVML--EDGRSKGFGFVCFSSPEEATKAVTEM-NGRIVGTKPLYVALA-QRKE 426
+ + G SKG FV FS+P EA+ + + +G I+ + + LA RKE
Sbjct: 293 IICKYKDSGHSKGTAFVHFSTPIEASNCIEGVEDGVIIDNRLVKANLAIPRKE 345
Score = 31.9 bits (69), Expect = 1.2
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Frame = +1
Query: 94 MLDEPXKKAERQKELKRKFEQLKSERLTRY-QGVNLYVKNLDDTIDDERLR----KEFAP 258
M + K ER E RK K E + V L + NL I+D +L+ K +P
Sbjct: 382 MSKDDAAKRERIAEAMRK----KLENTNMFISPVRLCIHNLPQKINDVKLKELAQKFTSP 437
Query: 259 FGTITSAKVMLE------DGRSK--GFGFVCFSSPEEATKAVTEMN 372
IT +V ++ DG+ K GFGFV F A + + ++N
Sbjct: 438 GALITECRVWMDKKRLTPDGKPKSSGFGFVAFKEHMHALECLKKLN 483
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 41.9 bits (94), Expect = 0.001
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEM 369
NL+V ++ D + D L + F + + AK+ DG SKG GFV F + + A+ EM
Sbjct: 157 NLHVSSVPDDMADAELYRIFDKYQSCRGAKMFRFVDGSSKGSGFVRFGNQTDQQMALVEM 216
Query: 370 NGRIVGTKPLYVALAQRKEDR 432
+ VG + + LA + +R
Sbjct: 217 HRTKVGGCRIILKLAGSRGER 237
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 41.9 bits (94), Expect = 0.001
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM- 369
L++ L ++E LR+ FA FG I V+ + DG+S+G FV F++ A A EM
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Query: 370 -NGRIVG-TKPLYVALAQRKEDR 432
+ + G + PL V A ++D+
Sbjct: 204 HSQTMEGCSAPLVVKFADTQKDK 226
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 184 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAV 360
Q V+L V +D DE +K F GT+ ++ + DG SKGFGFV SS E K +
Sbjct: 171 QPVDLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKSDGNSKGFGFVRMSSVGEQNKVL 230
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 357
+YV N+ + ++ L F +G + S +++ D SKGFGFV S E KA
Sbjct: 53 IYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKA 106
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
++V + +++E L F +G + A+V + +GRS+GF FV F++ E A+
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 370 NGRIVGTKPLYVALAQRKEDRK 435
I G K + V A+ +E++K
Sbjct: 91 EQTIKG-KSVEVKPAKSRENKK 111
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 369
++V + +++E L F +G + A+V + +GRS+GF FV F++ E A+
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 370 NGRIVGTKPLYVALAQRKEDRK 435
I G K + V A+ +E++K
Sbjct: 91 EQTIKG-KSVEVKPAKSRENKK 111
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 357
+YV N+ + ++ L F +G + S +++ D SKGFGFV S E KA
Sbjct: 53 IYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKA 106
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 40.3 bits (90), Expect = 0.004
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Frame = +3
Query: 516 CRRILCSHHTSCTTLLWSSTNAANTTY----TPMDCPTTCKTKHSNTCI--GLRKYATTL 677
C+R CS+ C T S TN N+ T C TC SN C G + +
Sbjct: 112 CQRNSCSN--LCNTGSNSCTNRCNSQCLQICTTPSCTNTCSNSCSNACSNGGNQPIVIVI 169
Query: 678 PSSTKSSNTGCITYFSRSKTNHRTTRCCWHGWINPCTSC 794
PSS+++ C S + T + C + + C SC
Sbjct: 170 PSSSRNCQNSCQNQCSSACTTMTCRQTCQNTCLGSCNSC 208
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 40.3 bits (90), Expect = 0.004
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 372
L++ L ++E LR+ FA FG I V+ + DG+S+G FV F++ A A EM+
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 39.5 bits (88), Expect = 0.006
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 366
+++V N+ + ++ +R F+ G + S K++ E G+ KG+GF+ F + A A+
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 367 MNG 375
+NG
Sbjct: 79 LNG 81
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 39.5 bits (88), Expect = 0.006
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +1
Query: 64 GNSARGXNPCMLDEPXKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 243
G RG P LD P + E L+ + +++ NL + ++L
Sbjct: 147 GAGGRGPPPKDLDRPTRTGTYDL-FGLNMEFLRQHNIEPPLCERIFIANLAFNVGTDKLY 205
Query: 244 KEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 411
+ F G IT ++ +G+SKG + ++ P EA +AV+ +NG+ + + L V +
Sbjct: 206 EVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNLVVKM 262
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 39.5 bits (88), Expect = 0.006
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 372
+++ L + + ++++++ FG + + + ++ G SKG+ F + P +A+ +N
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 352
Query: 373 GRIVGTKPLYVALAQRKEDR 432
G +G K L V LA + R
Sbjct: 353 GMQLGDKQLVVQLACANQQR 372
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 39.5 bits (88), Expect = 0.006
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 372
+++ L + + ++++++ FG + + + ++ G SKG+ F + P +A+ +N
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 352
Query: 373 GRIVGTKPLYVALAQRKEDR 432
G +G K L V LA + R
Sbjct: 353 GMQLGDKQLVVQLACANQQR 372
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 39.5 bits (88), Expect = 0.006
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 372
+++ L + + ++++++ FG + + + ++ G SKG+ F + P +A+ +N
Sbjct: 268 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 327
Query: 373 GRIVGTKPLYVALAQRKEDR 432
G +G K L V LA + R
Sbjct: 328 GMQLGDKQLVVQLACANQQR 347
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 39.5 bits (88), Expect = 0.006
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 372
+++ L + + ++++++ FG + + + ++ G SKG+ F + P +A+ +N
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 330
Query: 373 GRIVGTKPLYVALAQRKEDR 432
G +G K L V LA + R
Sbjct: 331 GMQLGDKQLVVQLACANQQR 350
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.011
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 366
+L + NL LR+ F +G I + + +SKGFGFV F +A A+
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 367 MNGRIVGTKPLYVALAQ 417
+G++V + L V LA+
Sbjct: 80 TDGKLVDGRELRVTLAK 96
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 38.7 bits (86), Expect = 0.011
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 366
+L + NL LR+ F +G I + + +SKGFGFV F +A A+
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 367 MNGRIVGTKPLYVALAQ 417
+G++V + L V LA+
Sbjct: 80 TDGKLVDGRELRVTLAK 96
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 38.7 bits (86), Expect = 0.011
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
++V L D+ +R+ ++ FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Score = 38.7 bits (86), Expect = 0.011
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 369
LYV + + ++ L + F +GT+T ++++L+ K GFGFV F + + V +
Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 175
Query: 370 NGRIVG 387
+ + G
Sbjct: 176 SHMVNG 181
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 38.7 bits (86), Expect = 0.011
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 369
LYV + + ++ L + F +GT+T ++++L+ K GFGFV F + + V +
Sbjct: 78 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 137
Query: 370 NGRIVG 387
+ + G
Sbjct: 138 SHMVNG 143
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 238 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
+R+ ++ FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 45
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 38.7 bits (86), Expect = 0.011
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 369
LYV + + ++ L + F +GT+T ++++L+ K GFGFV F + + V +
Sbjct: 78 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 137
Query: 370 NGRIVG 387
+ + G
Sbjct: 138 SHMVNG 143
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 238 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
+R+ ++ FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 45
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 38.7 bits (86), Expect = 0.011
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
++V L D+ +R+ ++ FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Score = 38.7 bits (86), Expect = 0.011
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 369
LYV + + ++ L + F +GT+T ++++L+ K GFGFV F + + V +
Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 175
Query: 370 NGRIVG 387
+ + G
Sbjct: 176 SHMVNG 181
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 38.7 bits (86), Expect = 0.011
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 366
++V L D+ +R+ ++ FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Score = 38.7 bits (86), Expect = 0.011
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 369
LYV + + ++ L + F +GT+T ++++L+ K GFGFV F + + V +
Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 175
Query: 370 NGRIVG 387
+ + G
Sbjct: 176 SHMVNG 181
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 37.9 bits (84), Expect = 0.019
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 202 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 372
V NL ++++ LR F G + + + G KGF FV F S ++A +A+ E+N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 37.9 bits (84), Expect = 0.019
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
+++ L T E +++ F +G + A +M + R +GFGFV F S E A K V E+
Sbjct: 136 VFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK-VCEI 194
Query: 370 NGRIVGTKPLYVALAQRKE 426
+ + K + AQ KE
Sbjct: 195 HFHEINGKMVECKKAQPKE 213
Score = 36.3 bits (80), Expect = 0.057
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
+++ L E LR F FG + VM + R++GFGF+ F P K +
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR 106
Query: 370 NGRIVGTK 393
+ G K
Sbjct: 107 EHELDGKK 114
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 37.9 bits (84), Expect = 0.019
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
+++ L T E +++ F +G + A +M + R +GFGFV F S E A K V E+
Sbjct: 136 VFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK-VCEI 194
Query: 370 NGRIVGTKPLYVALAQRKE 426
+ + K + AQ KE
Sbjct: 195 HFHEINGKMVECKKAQPKE 213
Score = 36.3 bits (80), Expect = 0.057
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
+++ L E LR F FG + VM + R++GFGF+ F P K +
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR 106
Query: 370 NGRIVGTK 393
+ G K
Sbjct: 107 EHELDGKK 114
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 37.1 bits (82), Expect = 0.033
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 357
L V NL ++ LR F FG I ++ + G S+GFGF+ F+ E+AT A
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAA 133
>U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform c protein.
Length = 145
Score = 35.9 bits (79), Expect = 0.076
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 187 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFG 318
G NL++ +L D L FAPFG I SAKV ++ SK FG
Sbjct: 75 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFG 120
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 35.9 bits (79), Expect = 0.076
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 193 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 372
N++V+ + + D L + FG IT V + G+GFV F + A K + EM+
Sbjct: 97 NVFVRGISRDMPDTEL---YQAFGGITDGVVQCHV--ADGYGFVLFDTRANAQKKIVEMD 151
Query: 373 GRIVGTKPLYVALAQ 417
G+ + K + V+ A+
Sbjct: 152 GKTLNGKLISVSWAR 166
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 35.5 bits (78), Expect = 0.10
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 121 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED- 297
ER+ L + KS T +Y+ L + + + F+ +G + + ++ +
Sbjct: 15 ERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKD 74
Query: 298 -GRSKGFGFVCFSSPEEATKAVTEMNG 375
G+SKGF F+C+ AV NG
Sbjct: 75 TGKSKGFAFLCYKDQRSTILAVDNFNG 101
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 35.1 bits (77), Expect = 0.13
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 348
++V + + LR+ F F + K++ DG+SKG+GF+ F + ++A
Sbjct: 68 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQA 119
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
L++ L DE+L F+ +G + A V+ + S+GFGFV F+S A A+ +
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 110
Query: 370 NGRIVG 387
++ G
Sbjct: 111 PHKLGG 116
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 232 ERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IVGTKPLYV 405
+ LR F FGT+ +++ G+ +G GFV + E A + + +GR IV + + V
Sbjct: 162 DSLRVYFETFGTLDQVEIL---GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEV 217
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
L++ L DE+L F+ +G + A V+ + S+GFGFV F+S A A+ +
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 130
Query: 370 NGRIVG 387
++ G
Sbjct: 131 PHKLGG 136
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 232 ERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IVGTKPLYV 405
+ LR F FGT+ +++ G+ +G GFV + E A + + +GR IV + + V
Sbjct: 182 DSLRVYFETFGTLDQVEIL---GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEV 237
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
L++ L DE+L F+ +G + A V+ + S+GFGFV F+S A A+ +
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 131
Query: 370 NGRIVG 387
++ G
Sbjct: 132 PHKLGG 137
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 232 ERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IVGTKPLYV 405
+ LR F FGT+ +++ G+ +G GFV + E A + + +GR IV + + V
Sbjct: 183 DSLRVYFETFGTLDQVEIL---GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEV 238
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 35.1 bits (77), Expect = 0.13
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 348
++V + + LR+ F F + K++ DG+SKG+GF+ F + ++A
Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQA 120
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 34.3 bits (75), Expect = 0.23
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 1/113 (0%)
Frame = +1
Query: 547 PAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQXXXXXXXXXXXXXXXXTSL 726
PA P + P+I P ++ P++ P A A + L
Sbjct: 210 PAPEPLVPEKKPKIEDAPTTSSPKKSTPTSAPPTRASARVSKPNRLYADGSFNTEI---L 266
Query: 727 GARPITGQQGVAGTAGSIRAPLVTQSSRPAGY-KYTANMRNPPAPQPAVHIQG 882
G IT Q V P + PAG K TA R PPAP+P I G
Sbjct: 267 GRTRITEQNPVKEAQAKESTPELADLPLPAGRRKSTAAPRAPPAPKPIPVING 319
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 33.9 bits (74), Expect = 0.31
Identities = 23/87 (26%), Positives = 35/87 (40%)
Frame = +3
Query: 543 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYF 722
T TT +ST TT T TT T T TT P++T ++ T
Sbjct: 299 TESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKPTTTTP 358
Query: 723 SRSKTNHRTTRCCWHGWINPCTSCYSK 803
+ ++T + C W++ CY+K
Sbjct: 359 TTTRTPVDCSAKCDPFWVSYSDGCYAK 385
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.5 bits (73), Expect = 0.40
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 292 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 426
+ G KGF +V F + ++ A++ +NG G + L V AQ+++
Sbjct: 48 DSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQRD 92
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 33.1 bits (72), Expect = 0.53
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 544 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQ 669
PP Q+F P Q Q P+ A P V+P QTPAS+Y Q
Sbjct: 2080 PPVQQFQ-PQQQQQYYQ-PQQQALPQVQPQFQTPASSYGGGQ 2119
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 33.1 bits (72), Expect = 0.53
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 369
++V L D+ L + F FG I A V+ + +S+G+GFV A +A +
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDP 96
Query: 370 NGRIVGTK 393
N I G K
Sbjct: 97 NPIIDGRK 104
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 33.1 bits (72), Expect = 0.53
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
LY+KNL I E + + F FG + +V ++G FV + +A A ++G
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVG-NTAETRGTAFVVYEDIFDAKTACEHLSG 79
Query: 376 RIVGTKPLYVALAQ 417
V + L V Q
Sbjct: 80 YNVSNRYLVVLYYQ 93
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 33.1 bits (72), Expect = 0.53
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 544 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQ 669
PP Q+F P Q Q P+ A P V+P QTPAS+Y Q
Sbjct: 705 PPVQQFQ-PQQQQQYYQ-PQQQALPQVQPQFQTPASSYGGGQ 744
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 32.7 bits (71), Expect = 0.71
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
+Y+ L + ++ + F +G I V+L++G FGFV F +A AV ++NG
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRD--VLLKNG----FGFVEFDDKRDAEDAVHDLNG 58
Query: 376 RIVG 387
+ +G
Sbjct: 59 KELG 62
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 32.7 bits (71), Expect = 0.71
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
+Y+ L + ++ + F +G I V+L++G FGFV F +A AV ++NG
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRD--VLLKNG----FGFVEFDDKRDAEDAVHDLNG 58
Query: 376 RIVG 387
+ +G
Sbjct: 59 KELG 62
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 32.7 bits (71), Expect = 0.71
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
+Y+ L + ++ + F +G I V+L++G FGFV F +A AV ++NG
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRD--VLLKNG----FGFVEFDDKRDAEDAVHDLNG 58
Query: 376 RIVG 387
+ +G
Sbjct: 59 KELG 62
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 32.7 bits (71), Expect = 0.71
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKE----FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 363
LY+ NL++ I + LRK F FG I S + + +G V F A+ A
Sbjct: 10 LYINNLNEKIKIDELRKSLVAVFKQFGEIVSV-MCFRTLKMRGQAHVIFKELPAASAARE 68
Query: 364 EMNGRIVGTKPLYVALAQRKED 429
+NG KP+ + A+ D
Sbjct: 69 ALNGFPFYEKPMRIQFAREDSD 90
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 32.7 bits (71), Expect = 0.71
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L+V NL + + + L++ F+P G I + KGF F+ + A A ++G
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLS-----GKGFAFLRLDTRAHAESAKEAIDG 172
Query: 376 RIVGTKPLYVALA 414
RI+ + + V A
Sbjct: 173 RIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 32.7 bits (71), Expect = 0.71
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 375
L+V NL + + + L++ F+P G I + KGF F+ + A A ++G
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLS-----GKGFAFLRLDTRAHAESAKEAIDG 172
Query: 376 RIVGTKPLYVALA 414
RI+ + + V A
Sbjct: 173 RIIHGRQVRVRFA 185
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/78 (25%), Positives = 40/78 (51%)
Frame = +1
Query: 190 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 369
V +Y+ L + D + F +G ++ V++++G FGFV F +A AV ++
Sbjct: 2 VRVYIGRLPNRASDRDVEHFFRGYGKLSD--VIMKNG----FGFVDFQDQRDADDAVHDL 55
Query: 370 NGRIVGTKPLYVALAQRK 423
NG+ + + + + +RK
Sbjct: 56 NGKELCGERVILEFPRRK 73
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 30.7 bits (66), Expect = 2.8
Identities = 32/118 (27%), Positives = 40/118 (33%), Gaps = 1/118 (0%)
Frame = +1
Query: 517 AGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQXXXXXXXXX 696
A G PT P A+ PA P+ P P A+P + PS +A
Sbjct: 97 AEGGAAPTAP-AEPVPAPAPEPEAAPAPAPVAEPALAPSPDAAPAADGASYSAGAAAPAG 155
Query: 697 XXXXXXXTSLGARPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNP-PAPQPA 867
AR + G A A + AP + PA A P PAP PA
Sbjct: 156 GASYPAKKRRVARDY-AEGGAAPAAPAEPAPEPAPAPAPAPEAALAPETAPAPAPAPA 212
>Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical
protein C38D4.4 protein.
Length = 556
Score = 30.7 bits (66), Expect = 2.8
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Frame = +1
Query: 502 FQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPT-PRWTA------QPPVRPSTQTPASAYA 660
F S GY P F PA + P P+ T PPVRPST T S++A
Sbjct: 116 FHNKSGFGYAAHLRSPKPSFMYPASSARANPAKPQATGYRNTVRHPPVRPSTATGHSSFA 175
Query: 661 N 663
N
Sbjct: 176 N 176
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 609 CPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGC-ITYFSRSKTNHRTTRCCWHGWINPC 785
CPT S +GL K A T+ K S +GC + + KT H C + + PC
Sbjct: 121 CPTCRGPTPSVRNLGLEKIANTVRFPCKFSTSGCPLNFHHADKTEHEEL-CEFRPYCCPC 179
Query: 786 TSCYSK 803
K
Sbjct: 180 PGASCK 185
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 297
LYV NLD T+ ++ + F G++T KV+ ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE 81
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 609 CPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGC-ITYFSRSKTNHRTTRCCWHGWINPC 785
CPT S +GL K A T+ K S +GC + + KT H C + + PC
Sbjct: 187 CPTCRGPTPSVRNLGLEKIANTVRFPCKFSTSGCPLNFHHADKTEHEEL-CEFRPYCCPC 245
Query: 786 TSCYSK 803
K
Sbjct: 246 PGASCK 251
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 30.3 bits (65), Expect = 3.8
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 543 TSCTTLLWSSTNAANTTYTPMDCPT-TCKTKHSNTCIGLRK-----YATTLPSSTKSSNT 704
TS T S A TT TP T T T S T + +K TTLPS+T S+ T
Sbjct: 502 TSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTT 561
Query: 705 GCIT 716
T
Sbjct: 562 KTTT 565
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 30.3 bits (65), Expect = 3.8
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 543 TSCTTLLWSSTNAANTTYTPMDCPT-TCKTKHSNTCIGLRK-----YATTLPSSTKSSNT 704
TS T S A TT TP T T T S T + +K TTLPS+T S+ T
Sbjct: 343 TSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTT 402
Query: 705 GCIT 716
T
Sbjct: 403 KTTT 406
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 30.3 bits (65), Expect = 3.8
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 543 TSCTTLLWSSTNAANTTYTPMDCPT-TCKTKHSNTCIGLRK-----YATTLPSSTKSSNT 704
TS T S A TT TP T T T S T + +K TTLPS+T S+ T
Sbjct: 383 TSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTT 442
Query: 705 GCIT 716
T
Sbjct: 443 KTTT 446
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 30.3 bits (65), Expect = 3.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 196 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSSPEEATKAVTEM 369
+YV N + +D+E L + F G + KV+L D R F V F A+ M
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPV--VKVILRDVRDSNAKFALVEFEDELSVLFAIELM 72
Query: 370 NG 375
NG
Sbjct: 73 NG 74
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 532 VPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYAN 663
VP + A Q+ Q++PT T Q PV STQ PAS A+
Sbjct: 143 VPLLQAASHIPSMLQLCQLQPT---TIQSPVYASTQQPASTSAS 183
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 29.9 bits (64), Expect = 5.0
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 570 STNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRT 749
+T + TT T PTT + H T + TT+P ST+ T T + T T
Sbjct: 96 TTTSTTTTVTTTPIPTTVTSTHIPTTVTTTSIPTTVP-STQLPTTVTTTPIPTTTTRKTT 154
Query: 750 T 752
T
Sbjct: 155 T 155
>Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical
protein T07G12.3 protein.
Length = 638
Score = 29.5 bits (63), Expect = 6.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 584 KYDLHPDGLPNHL*DQALKHLHR 652
K+++H + L NHL ++ L H+HR
Sbjct: 511 KFEIHNETLKNHLGEKLLNHVHR 533
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 6.6
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +1
Query: 202 VKNLDDTIDDERLRKEFAPFGTITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEMN 372
+KNL + L + F+ +G I + + + +G+G+V + + E+A K++ M+
Sbjct: 137 IKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMD 196
Query: 373 GRIVGTKPLYVAL 411
G + ++V +
Sbjct: 197 GGQIDGMAVHVEM 209
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 447 SQMGFA-VFLALS*SNIKRFCSNNTSIHFS 361
SQ+GF V+ N++ F +NNTSIH S
Sbjct: 151 SQLGFCCVYFVFMADNLEDFFNNNTSIHLS 180
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/74 (22%), Positives = 26/74 (35%)
Frame = +1
Query: 592 PTPRWTAQPPVRPSTQTPASAYANMQXXXXXXXXXXXXXXXXTSLGARPITGQQGVAGTA 771
P P T PP P+T TP + T+ P+T + V +
Sbjct: 492 PVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTTAPVT-KPTVPSST 550
Query: 772 GSIRAPLVTQSSRP 813
P+ T +S+P
Sbjct: 551 TQTAPPVTTPTSQP 564
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 624 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 770
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 24 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 71
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 624 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 770
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 8 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 55
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 624 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 770
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 8 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 55
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 624 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 770
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 8 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 55
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 29.1 bits (62), Expect = 8.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 609 CPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS 725
C T C++ SN+C + T S + S+ C T +S
Sbjct: 396 CQTACQSSCSNSCQAAQPATTACQQSPQQSSCSCQTNYS 434
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,424,265
Number of Sequences: 27780
Number of extensions: 525200
Number of successful extensions: 2191
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 1846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2147
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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