Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C03_e595_05.seq
         (1527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   7.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   7.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   7.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 653 LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLLLKA 805
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L L A
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLA 294


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 524 PPALLGWNI 498
           PP LLGWN+
Sbjct: 17  PPRLLGWNV 25


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 653 LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLLLKA 805
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L L A
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLA 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,520
Number of Sequences: 438
Number of extensions: 6928
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53472375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)