Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C02_e587_06.seq
         (1511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   3.4  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   5.9  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   5.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 746 RRRNPRSAVKKRSNAGVRLQCVTLRALATVRRKK 847
           RR+     +KK  + G+R +CV       V+RK+
Sbjct: 237 RRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKE 270


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 44  WXPPGCRXSDEVIAVMKLNVSYPATGCQKLFEVVDEHKLRI 166
           W   G +   E+   M ++   P+TG Q + +VV  HKL++
Sbjct: 40  WMVAG-KADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 44  WXPPGCRXSDEVIAVMKLNVSYPATGCQKLFEVVDEHKLRI 166
           W   G +   E+   M ++   P+TG Q + +VV  HKL++
Sbjct: 40  WMVAG-KADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKL 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,499
Number of Sequences: 336
Number of extensions: 4598
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45374275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)